Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011848.1 Corchorus olitorius cultivar O-4 contig11881, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2149
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.32


Found at i:868 original size:11 final size:11

Alignment explanation


    Indices: 833--881  Score: 52
    Period size: 11  Copynumber: 4.8  Consensus size: 11

        823 CTTGAAATAA

                       
        833 ATCTTC-AATG
          1 ATCTTCAAATG

            *          
        843 GTCTTC-AA-G
          1 ATCTTCAAATG

                      *
        852 -TCTTCAAATT
          1 ATCTTCAAATG

                       
        862 ATCTTCAAATG
          1 ATCTTCAAATG

                     
        873 ATCTTCAAA
          1 ATCTTCAAA

        882 CACGAACTTC


Statistics
Matches: 33,  Mismatches: 3, Indels: 5
        0.80            0.07        0.12

Matches are distributed among these distances:
   8    5  0.15
   9    3  0.09
  10    7  0.21
  11   18  0.55

ACGTcount: A:0.33, C:0.20, G:0.08, T:0.39


Consensus pattern (11 bp):   
ATCTTCAAATG
Done.