Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001185.1 Corchorus olitorius cultivar O-4 contig01185, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7819
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.34


Found at i:3756 original size:13 final size:13

Alignment explanation


    Indices: 3738--3763  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       3728 AAATCGCCTC

                         
       3738 TTAAACATTACTA
          1 TTAAACATTACTA

                         
       3751 TTAAACATTACTA
          1 TTAAACATTACTA

       3764 GTGTACTGCC


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38


Consensus pattern (13 bp):   
TTAAACATTACTA

Found at i:6920 original size:16 final size:17

Alignment explanation


    Indices: 6894--6930  Score: 51
    Period size: 16  Copynumber: 2.2  Consensus size: 17

       6884 TGGGAAAAGA

                             
       6894 TAAAAATGAAA-AAT-G
          1 TAAAAATGAAATAATAG

                              
       6909 TAAAACATGAAATAATAG
          1 TAAAA-ATGAAATAATAG

                
       6927 TAAA
          1 TAAA

       6931 TGCATGTGGG


Statistics
Matches: 19,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  15    5  0.26
  16    6  0.32
  17    3  0.16
  18    5  0.26

ACGTcount: A:0.65, C:0.03, G:0.11, T:0.22


Consensus pattern (17 bp):   
TAAAAATGAAATAATAG
Done.