Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011851.1 Corchorus olitorius cultivar O-4 contig11884, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32463

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22--190
78
2.2
78
92
2
277
34
13
1
50
1.52
704--749
15
2.9
16
80
6
58
8
15
34
41
1.78
704--752
16
3.1
15
85
5
62
8
16
34
40
1.78
2001--2034
17
2.1
17
88
5
52
52
2
0
44
1.16
2557--2629
30
2.4
31
90
2
112
43
5
13
36
1.67
2694--2796
32
3.2
32
90
2
163
17
10
34
36
1.85
2930--2968
20
2.0
20
85
10
53
35
5
5
53
1.45
5572--5600
2
14.5
2
100
0
58
0
0
48
51
1.00
7827--7854
14
2.0
14
100
0
56
64
0
0
35
0.94
9207--9299
45
2.1
45
93
0
159
43
12
16
27
1.84
9945--10017
29
2.5
30
88
2
103
39
28
12
19
1.88
10096--10146
14
3.6
14
70
15
50
66
1
5
25
1.24
10095--10143
16
3.2
16
69
13
50
67
2
6
24
1.24
13824--13907
21
3.9
22
78
10
75
46
8
20
25
1.78
13825--13944
43
2.8
42
83
5
123
45
8
16
30
1.77
13846--14005
21
7.4
22
75
10
116
40
8
15
35
1.79
13825--13954
44
3.0
42
80
9
118
43
7
17
31
1.78
13929--14009
22
3.7
22
77
9
78
38
7
11
43
1.68
14615--14646
16
2.0
16
100
0
64
50
6
18
25
1.70
20037--20362
93
3.5
93
95
0
589
23
21
23
30
1.99
29800--29896
45
2.2
45
86
1
133
39
20
5
35
1.75
31249--31299
26
2.0
26
92
0
84
35
9
13
41
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31367--31393
2
13.5
2
100
0
54
0
51
0
48
1.00

Tables:   1

The End!