Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01011855.1 Corchorus olitorius cultivar O-4 contig11888, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4835
ACGTcount: A:0.23, C:0.19, G:0.20, T:0.38
Warning! 1 characters in sequence are not A, C, G, or T
Found at i:287 original size:154 final size:153
Alignment explanation
Indices: 1--1216 Score: 1738
Period size: 154 Copynumber: 7.9 Consensus size: 153
* * *
1 TTTACCTCATTTGGAACACTTGTTATTTTAGGCCTTTCGGGG-CCATTAGTTCCGTTTTGAATCG
1 TTTAGCTCATTTGGAACACTTGTTATTTT-GGCCTATCGGGGCCCATTAGTGCCGTTTTGAATCG
* * *
65 TATTCGATTTGGCAACCCTCGATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTG
65 TCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTG
130 GTGAGATTAGTCCACTGTGAAGTT
130 GTGAGATTAGTCCACTGTGAAGTT
* * ** * * *
154 TTTAGCTCATTTAGAACACTTGTTATTTTGTGCCCATCAAGGCCCATTAGTGACGTTCTAAATCG
1 TTTAGCTCATTTGGAACACTTGTTATTTTG-GCCTATCGGGGCCCATTAGTGCCGTTTTGAATCG
* * *
219 TCTTCGATTTGGTAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTGTAATCATTTCG
65 TCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTG
**
284 GTGAGATTAGAACACTGTGAAGTT
130 GTGAGATTAGTCCACTGTGAAGTT
* * ** * *
308 TTTAGCTCATTCGGAACACTTGTTATTTTGGTTCTATCAAGACCCATTAGTGACGTTTTGAATCG
1 TTTAGCTCATTTGGAACACTTGTTATTTTGG-CCTATCGGGGCCCATTAGTGCCGTTTTGAATCG
* * ** *
373 TCATCGATTTGGCAACCCTTGATGCTTTTCTTTCCATTAG-TTATGGCCTAACCATAATCATTTT
65 TCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATT-GTTTATGGCCTAACTATAATCATTTT
437 GGTGAGATTAGTCCACTGTGAAGTT
129 GGTGAGATTAGTCCACTGTGAAGTT
* * * *
462 TTTAGCTCATTTGAAACACTTGTTATTTCAGGCCTTTCGGGGCCCATTAGTTCCGTTTTGAATCG
1 TTTAGCTCATTTGGAACACTTGTTATTT-TGGCCTATCGGGGCCCATTAGTGCCGTTTTGAATCG
* * *
527 TCTTCGATTTGGGAAATCTCAATGCTTTTCTTTCCATTGTTTATGACCTAACTATAATCATTTTG
65 TCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTG
* *
592 GTGAGATTAGTACACCGTGAAGTT
130 GTGAGATTAGTCCACTGTGAAGTT
* *
616 TTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGTCGTTCTGAATCG
1 TTTAGCTCATTTGGAACACTTGTTATTTT-GGCCTATCGGGGCCCATTAGTGCCGTTTTGAATCG
681 TCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTG
65 TCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTG
* *
746 GTGAAATTATTCCACTGTGAAG-T
130 GTGAGATTAGTCCACTGTGAAGTT
* *
769 TTTAGCTCATTTGGAACACTTGTTATTTTAGGCCTTTCGGGGCCCATTAGTTCCGTTTTGAATCG
1 TTTAGCTCATTTGGAACACTTGTTATTTT-GGCCTATCGGGGCCCATTAGTGCCGTTTTGAATCG
* * * *
834 TCTTCGATTTTGCAACCCACGATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTG
65 TCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTG
899 GTGAGATTAGTCCACTGTGAAGTT
130 GTGAGATTAGTCCACTGTGAAGTT
*
923 TTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGTCGTTTTGAATCG
1 TTTAGCTCATTTGGAACACTTGTTATTTT-GGCCTATCGGGGCCCATTAGTGCCGTTTTGAATCG
** * * *
988 TCAACGATTTGGAAAACATCAATGCTTTTCTTTCCATTGTTTATAGCCTAACTATAATCATTTTG
65 TCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTG
* *
1053 GTCAAATTAGTCCACTGTGAAGTT
130 GTGAGATTAGTCCACTGTGAAGTT
* *
1077 TTTAGCTCATTTGGAACACTTGTTATTTTAGGCCTTTCGGGG-CCATTAGTTCCGTTTTGAATCG
1 TTTAGCTCATTTGGAACACTTGTTATTTT-GGCCTATCGGGGCCCATTAGTGCCGTTTTGAATCG
* * * * *
1141 TATTCGATTTCGCAACCCTCGATGCTTTTCTTTCAATTGTTTATGGCCTAACTATAATCATTTTG
65 TCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTG
* *
1206 GTCAAATTAGT
130 GTGAGATTAGT
1217 ATTGTTCTGA
Statistics
Matches: 947, Mismatches: 108, Indels: 16
0.88 0.10 0.01
Matches are distributed among these distances:
152 1 0.00
153 264 0.28
154 679 0.72
155 3 0.00
ACGTcount: A:0.22, C:0.19, G:0.18, T:0.41
Consensus pattern (153 bp):
TTTAGCTCATTTGGAACACTTGTTATTTTGGCCTATCGGGGCCCATTAGTGCCGTTTTGAATCGT
CTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGG
TGAGATTAGTCCACTGTGAAGTT
Found at i:2027 original size:19 final size:19
Alignment explanation
Indices: 2003--2049 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
1993 GAGAAAATAA
2003 GCACGGAGCTTGGTTTTTT
1 GCACGGAGCTTGGTTTTTT
2022 GCACGGAGCTTGGTTTTTT
1 GCACGGAGCTTGGTTTTTT
*
2041 GCGCGGAGC
1 GCACGGAGC
2050 AAGTTTTTAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.11, C:0.19, G:0.36, T:0.34
Consensus pattern (19 bp):
GCACGGAGCTTGGTTTTTT
Found at i:2057 original size:19 final size:19
Alignment explanation
Indices: 2003--2057 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 19
1993 GAGAAAATAA
**
2003 GCACGGAGCTTGGTTTTTT
1 GCACGGAGCAAGGTTTTTT
**
2022 GCACGGAGCTTGGTTTTTT
1 GCACGGAGCAAGGTTTTTT
*
2041 GCGCGGAGCAA-GTTTTT
1 GCACGGAGCAAGGTTTTT
2058 AGCTGCAGGA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
18 6 0.18
19 27 0.82
ACGTcount: A:0.13, C:0.16, G:0.33, T:0.38
Consensus pattern (19 bp):
GCACGGAGCAAGGTTTTTT
Found at i:2075 original size:20 final size:20
Alignment explanation
Indices: 2021--2077 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 20
2011 CTTGGTTTTT
*
2021 TGCACGGAGCTTGGTTTTTTGC
1 TGCA-GGAGC-TGGTTTTTAGC
**
2043 -GC-GGAGCAAGTTTTTAGC
1 TGCAGGAGCTGGTTTTTAGC
2061 TGCAGGAGCTGGTTTTT
1 TGCAGGAGCTGGTTTTT
2078 GATTTCTCGG
Statistics
Matches: 28, Mismatches: 5, Indels: 6
0.72 0.13 0.15
Matches are distributed among these distances:
18 8 0.29
19 7 0.25
20 11 0.39
21 2 0.07
ACGTcount: A:0.14, C:0.16, G:0.33, T:0.37
Consensus pattern (20 bp):
TGCAGGAGCTGGTTTTTAGC
Found at i:2735 original size:154 final size:154
Alignment explanation
Indices: 2455--4833 Score: 3220
Period size: 154 Copynumber: 15.4 Consensus size: 154
2445 TGACATCATG
* ** * * *
2455 ATTTGGAACACTTGTTATTTTGGGCCTAGCAAGACCCATTAGTGACGTTTTGAATCGTCATCGAT
1 ATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTACGTTTTGAATCGTCTTCGAT
* ** *
2520 TTGGCAACCCTTGATGCTATTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATT
66 TTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATT
2585 AGTCCACTGTGAAGTTTTTAGCTC
131 AGTCCACTGTGAAGTTTTTAGCTC
** * * * *
2609 ATTTGGAACACTTGTTATTTCAGGCCTTTCGGGGCCCATTCGTTCCGTTTTGAATAGTCTTCGAT
1 ATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTACGTTTTGAATCGTCTTCGAT
* * *
2674 TTGGCAACCCTCGATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCTTTTTGGTGAGATT
66 TTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATT
* *
2739 AGTCCACTGTGATGTATTTAGCTC
131 AGTCCACTGTGAAGTTTTTAGCTC
* * *
2763 ATTTGGAACACTTGTTATTTTAGGCCTTTCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGA-
1 ATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTACGTTTTGAATCGTCTTCGAT
*
2827 TTGGC-AGCC-CAGTATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGA
66 TTGGCAAACCTCA--ATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGA
*
2890 TTAGTCCACTGTAAAGTTTTTAGCTC
129 TTAGTCCACTGTGAAGTTTTTAGCTC
*
2916 TTTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGT-CGTTTTGAATCGTCTTCGA
1 ATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGT-TACGTTTTGAATCGTCTTCGA
** * *
2980 TTTGAAAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTGTAATCATTTCGGTGAGAT
65 TTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGAT
** *
3045 TAGAACACTGTGAAATTTTTAGCTC
130 TAGTCCACTGTGAAGTTTTTAGCTC
* * ** * *
3070 ATTTGGAACACTTGTTATTTTGTGCCTTTCAAGGCCCATTAGTGACGTTTTAAATCGTCTTCGAT
1 ATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTACGTTTTGAATCGTCTTCGAT
* * * **
3135 TTGGTAAACCTCAATGTTTTTCTTTCCATTGTTTATGGCCTAACTGTAATCA-TTTCATGAGATT
66 TTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATT
** *
3199 AGAACACTGTGAAGTTTTTAACTC
131 AGTCCACTGTGAAGTTTTTAGCTC
* ** * * *
3223 ATTTGGAACACTTGTTATTTTGGGCTTATCAAGACCCATTAGTGACGTTTTGAATCGTCATCGAT
1 ATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTACGTTTTGAATCGTCTTCGAT
* **
3288 TTGGCAACCCTTGATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATT
66 TTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATT
3353 AGTCCACTGTGAAGTTTTTAGCTC
131 AGTCCACTGTGAAGTTTTTAGCTC
** * ** * * *
3377 ATTCAGAACACTTGTTATTTTGTGCCTATCACGGCCCATTAGTGACGTTTTAAATCGTCTTCGAA
1 ATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTACGTTTTGAATCGTCTTCGAT
* * *
3442 TTGG-AAACCTCAATGTTTTTCTTTCCATTGTTTATGGCCTAACTGTAATCATTTCGGTGAGATT
66 TTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATT
**
3506 AGAACACTGTGAAGTTTTTAGCTC
131 AGTCCACTGTGAAGTTTTTAGCTC
* * * *
3530 ATTTGGAACACTTGTTATTTTGGGCCTAT-GAAGACCCATTAGTGACGTTTTGAATCGTCATCGA
1 ATTTGGAACACTTGTTATTTTGGGCCTATCG-GGGCCCATTAGTTACGTTTTGAATCGTCTTCGA
* ** *
3594 TTTGGCAACCCTTGATGCTTTTCTTTCCATTAG-TTATGGCCTAACTATAATCATTTTGGTTAGA
65 TTTGGCAAACCTCAATGCTTTTCTTTCCATT-GTTTATGGCCTAACTATAATCATTTTGGTGAGA
*
3658 TTGGTCCACTGTGAAGTTTTTAGCTC
129 TTAGTCCACTGTGAAGTTTTTAGCTC
*
3684 ATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGT-CGTTTTGAATCGTTTTCGA
1 ATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGT-TACGTTTTGAATCGTCTTCGA
* * * * * * *
3748 TTTGAG-AAACCTCATTGCTTTTATTTGCATTCTTTATGGCCTAACTGTAATTATTTCGGTGAGA
65 TTTG-GCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGA
**
3812 TTAGAACACTGTGAAGTTTTTAGCTC
129 TTAGTCCACTGTGAAGTTTTTAGCTC
* * * * * * * * * **
3838 ACTTGGAACACTTGTTACTTTAGGCCTTTCAGGGCCGATTATTTCCGTTTTAAATCGTCAACGAT
1 ATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTACGTTTTGAATCGTCTTCGAT
** * *
3903 TTGGCAGCCCACTATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATT
66 TTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATT
* *
3968 TGTCCACTGTAAAGTTTTTAGCTC
131 AGTCCACTGTGAAGTTTTTAGCTC
* * ** * * *
3992 ATTTGGAACACTTGTTATTTTGTGTCTATCAAGGCTCATTAGTGACGTTTTAAATCGTCTTCGAT
1 ATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTACGTTTTGAATCGTCTTCGAT
*
4057 TTGGTAAACCTCAATG-TTTTC-TTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATT
66 TTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATT
4120 AGTCCACTGTGAAGTTTTTAGCTC
131 AGTCCACTGTGAAGTTTTTAGCTC
*
4144 ATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGAT
1 ATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTACGTTTTGAATCGTCTTCGAT
4209 TTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATT
66 TTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATT
4274 AGTCCACTGTGAAGTTTTTAGCTC
131 AGTCCACTGTGAAGTTTTTAGCTC
* * * *
4298 ATTTGGAACACTTGTTATATTAGGCCTTTCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGAT
1 ATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTACGTTTTGAATCGTCTTCGAT
* * *
4363 TTGGCAACCCTCGATGCTTTTGTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATT
66 TTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATT
4428 AGTCCACTGTGTAAGTTTTTAGCTC
131 AGTCCACTGTG-AAGTTTTTAGCTC
* *
4453 ATTTGGAACACTTGTTATTTTGGGCCTATCGGGGGCTCATTAGTTTCGTTTTGAATCGTCTTCGA
1 ATTTGGAACACTTGTTATTTTGGGCCTATC-GGGGCCCATTAGTTACGTTTTGAATCGTCTTCGA
* * *
4518 TTTGGCAAACCTCAATGCTTTTCTTTCCATTG-TTATGGCCAAACTNTAATAATTTTTGGTGAGA
65 TTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCA-TTTTGGTGAGA
* *
4582 TTTAGTCCCACTGTGAACTTTTATAGATTC
129 -TTAGT-CCACTGTGAAGTTTT-TAG-CTC
** * * * * *
4612 ACGTGGAACACCTGTTTATTTTGGGCCTATCGGCGCCCATTAGTTCCGTTTTCAATCGTCTTCGG
1 ATTTGGAACACTTG-TTATTTTGGGCCTATCGGGGCCCATTAGTTACGTTTTGAATCGTCTTCGA
*
4677 TTTGGTCAAACCTCAATGCTTTTCTTTCCATTTTTTATGGCCTAACTATAATCATTTTGGTGAGA
65 TTTGG-CAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGA
4742 TTAGTCCACTGTGAAGTTTTTAGCTC
129 TTAGTCCACTGTGAAGTTTTTAGCTC
* * ** * *
4768 ATTTGGAATACTCG-TATTTTGGGCCTTATCGAAGCCCATTAGTTACGTATTGAATAGTCTTCGA
1 ATTTGGAACACTTGTTATTTTGGGCC-TATCGGGGCCCATTAGTTACGTTTTGAATCGTCTTCGA
4832 TT
65 TT
4834 GG
Statistics
Matches: 1969, Mismatches: 226, Indels: 59
0.87 0.10 0.03
Matches are distributed among these distances:
151 1 0.00
152 139 0.07
153 419 0.21
154 1068 0.54
155 96 0.05
156 85 0.04
157 14 0.01
158 25 0.01
159 52 0.03
160 53 0.03
161 17 0.01
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.41
Consensus pattern (154 bp):
ATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTACGTTTTGAATCGTCTTCGAT
TTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATT
AGTCCACTGTGAAGTTTTTAGCTC
Found at i:3010 original size:307 final size:306
Alignment explanation
Indices: 2455--4833 Score: 3205
Period size: 307 Copynumber: 7.7 Consensus size: 306
2445 TGACATCATG
* * * *
2455 ATTTGGAACACTTGTTATTTTGGGCCTAGCAAGACCCATTAGTGACGTTTTGAATCGTCATCGAT
1 ATTTGGAACACTTGTTATTTT-GGCCTATCAGGGCCCATTAGTGACGTTTTGAATCGTCTTCGAT
* ** *
2520 TTGGCAACCCTTGATGCTATTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATT
65 TTGG-AAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATT
** * *
2585 AGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTCAGGCCTTTCGGGGCCCATTC
129 AGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTA
* *
2650 GTTCCGTTTTGAATAGTCTTCGATTTGGCAACCCTCGATGCTTTTCTTTCCATTGTTTATGGCCT
194 GTTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCT
* * *
2715 AACTATAATCTTTTTGGTGAGATTAGTCCACTGTGATGTATTTAGCTC
259 AACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTC
* * **
2763 ATTTGGAACACTTGTTATTTTAGGCCTTTCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGA-
1 ATTTGGAACACTTGTTATTTT-GGCCTATCAGGGCCCATTAGTGACGTTTTGAATCGTCTTCGAT
* *
2827 TTGGCAGCC-CAGTATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGAT
65 TTGGAAACCTCA--ATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGAT
* *
2891 TAGTCCACTGTAAAGTTTTTAGCTCTTTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATT
128 TAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATT
** *
2956 AGTGT-CGTTTTGAATCGTCTTCGATTTGAAAAACCTCAATGCTTTTCTTTCCATTGTTTATGGC
193 AGT-TCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGC
* * ** *
3020 CTAACTGTAATCATTTCGGTGAGATTAGAACACTGTGAAATTTTTAGCTC
257 CTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTC
* * *
3070 ATTTGGAACACTTGTTATTTTGTGCCTTTCAAGGCCCATTAGTGACGTTTTAAATCGTCTTCGAT
1 ATTTGGAACACTTGTTATTTTG-GCCTATCAGGGCCCATTAGTGACGTTTTGAATCGTCTTCGAT
* * **
3135 TTGGTAAACCTCAATGTTTTTCTTTCCATTGTTTATGGCCTAACTGTAATCA-TTTCATGAGATT
65 TTGG-AAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATT
** * * ** *
3199 AGAACACTGTGAAGTTTTTAACTCATTTGGAACACTTGTTATTTTGGGCTTATCAAGACCCATTA
129 AGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTA
** * **
3264 GTGACGTTTTGAATCGTCATCGATTTGGCAACCCTTGATGCTTTTCTTTCCATTGTTTATGGCCT
194 GTTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCT
3329 AACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTC
259 AACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTC
** * * *
3377 ATTCAGAACACTTGTTATTTTGTGCCTATCACGGCCCATTAGTGACGTTTTAAATCGTCTTCGAA
1 ATTTGGAACACTTGTTATTTTG-GCCTATCAGGGCCCATTAGTGACGTTTTGAATCGTCTTCGAT
* * *
3442 TTGGAAACCTCAATGTTTTTCTTTCCATTGTTTATGGCCTAACTGTAATCATTTCGGTGAGATTA
65 TTGGAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTA
** * *
3507 GAACACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTAT-GAAGACCCATTA
130 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCG-GGGCCCATTA
** * **
3571 GTGACGTTTTGAATCGTCATCGATTTGGCAACCCTTGATGCTTTTCTTTCCATTAG-TTATGGCC
194 GTTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCCATT-GTTTATGGCC
* *
3635 TAACTATAATCATTTTGGTTAGATTGGTCCACTGTGAAGTTTTTAGCTC
258 TAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTC
* * *
3684 ATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGTCGTTTTGAATCGTTTTCGAT
1 ATTTGGAACACTTGTTATTTT-GGCCTATCAGGGCCCATTAGTGACGTTTTGAATCGTCTTCGAT
* * * * * * *
3749 TTGAGAAACCTCATTGCTTTTATTTGCATTCTTTATGGCCTAACTGTAATTATTTCGGTGAGATT
65 TTG-GAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATT
** * * * * * *
3814 AGAACACTGTGAAGTTTTTAGCTCACTTGGAACACTTGTTACTTTAGGCCTTTCAGGGCCGATTA
129 AGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTA
* * ** * * *
3879 TTTCCGTTTTAAATCGTCAACGATTTGGCAGCCCACTATGCTTTTCTTTCCATTGTTTATGGCCT
194 GTTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCT
* *
3944 AACTATAATCATTTTGGTGAGATTTGTCCACTGTAAAGTTTTTAGCTC
259 AACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTC
* * * *
3992 ATTTGGAACACTTGTTATTTTGTGTCTATCAAGGCTCATTAGTGACGTTTTAAATCGTCTTCGAT
1 ATTTGGAACACTTGTTATTTTG-GCCTATCAGGGCCCATTAGTGACGTTTTGAATCGTCTTCGAT
4057 TTGGTAAACCTCAATG-TTTTC-TTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATT
65 TTGG-AAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATT
4120 AGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTA
129 AGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTA
*
4185 GTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCT
194 GTTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCT
4250 AACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTC
259 AACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTC
* * * **
4298 ATTTGGAACACTTGTTATATTAGGCCTTTCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGAT
1 ATTTGGAACACTTGTTAT-TTTGGCCTATCAGGGCCCATTAGTGACGTTTTGAATCGTCTTCGAT
* * *
4363 TTGGCAACCCTCGATGCTTTTGTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATT
65 TTGG-AAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATT
*
4428 AGTCCACTGTGTAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGGCTCAT
129 AGTCCACTGTG-AAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATC-GGGGCCCAT
* *
4493 TAGTTTCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTG-TTATGGC
192 TAGTTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGC
* * * * *
4557 CAAACTNTAATAATTTTTGGTGAGATTTAGTCCCACTGTGAACTTTTATAGATTC
257 CTAACTATAATCA-TTTTGGTGAGA-TTAGT-CCACTGTGAAGTTTT-TAG-CTC
** * ** *
4612 ACGTGGAACACCTGTTTATTTTGGGCCTATC-GGCGCCCATTAGTTCCGTTTTCAATCGTCTTCG
1 ATTTGGAACACTTG-TTATTTT-GGCCTATCAGG-GCCCATTAGTGACGTTTTGAATCGTCTTCG
* *
4676 GTTTGGTCAAACCTCAATGCTTTTCTTTCCATTTTTTATGGCCTAACTATAATCATTTTGGTGAG
63 ATTTGG--AAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAG
* * **
4741 ATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAATACTCG-TATTTTGGGCCTTATCGAAGCCC
126 ATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCC-TATCGGGGCCC
* * *
4805 ATTAGTTACGTATTGAATAGTCTTCGATT
190 ATTAGTTCCGTTTTGAATCGTCTTCGATT
4834 GG
Statistics
Matches: 1856, Mismatches: 183, Indels: 58
0.89 0.09 0.03
Matches are distributed among these distances:
306 313 0.17
307 750 0.40
308 431 0.23
309 63 0.03
310 77 0.04
311 5 0.00
312 14 0.01
313 3 0.00
314 58 0.03
315 74 0.04
316 68 0.04
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.41
Consensus pattern (306 bp):
ATTTGGAACACTTGTTATTTTGGCCTATCAGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATT
TGGAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAG
TCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGT
TCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAA
CTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTC
Done.