Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011863.1 Corchorus olitorius cultivar O-4 contig11896, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44442

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1058--1098
6
6.7
6
84
15
57
48
0
14
36
1.44
1058--1098
14
3.1
14
90
10
61
48
0
14
36
1.44
8156--8180
1
25.0
1
100
0
50
100
0
0
0
0.00
13472--13503
6
5.3
6
100
0
64
34
31
0
34
1.58
16320--16358
21
2.0
18
85
14
51
53
2
5
38
1.37
19497--19615
38
2.9
40
88
9
179
41
0
4
54
1.20
21455--21489
17
2.1
17
100
0
70
28
8
11
51
1.67
22813--22998
22
8.5
22
78
7
150
38
10
15
36
1.81
22812--22874
21
3.0
21
81
9
83
42
12
19
25
1.86
22855--22998
65
2.2
66
79
12
154
37
9
13
39
1.77
24114--24149
12
2.8
13
83
8
56
13
25
11
50
1.75
25650--25680
16
1.9
16
93
0
53
41
29
12
16
1.85
29591--29633
17
2.5
17
80
3
50
41
4
6
46
1.51
32116--32142
2
13.5
2
100
0
54
48
0
0
51
1.00
36927--36956
13
2.4
12
94
5
51
0
13
0
86
0.57
36927--36956
6
4.8
6
92
8
51
0
13
0
86
0.57
41633--41698
33
2.0
33
100
0
132
24
15
21
39
1.91
41695--41772
38
2.1
38
100
0
156
23
7
30
38
1.83
42419--42517
51
1.9
51
97
0
189
44
9
20
26
1.81

Tables:   1

The End!