Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011870.1 Corchorus olitorius cultivar O-4 contig11903, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30127

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1384--1422
14
2.9
13
80
3
51
53
2
2
41
1.28
1428--1665
123
1.9
128
90
7
387
47
0
12
39
1.47
3945--4021
26
3.0
26
96
0
136
41
2
3
51
1.34
5432--5462
15
2.1
15
100
0
62
29
0
19
51
1.47
8402--8481
29
2.7
30
88
3
108
30
17
11
41
1.84
8593--8644
27
1.9
27
92
7
88
50
5
7
36
1.55
9425--9451
7
3.9
7
100
0
54
0
11
0
88
0.50
9537--9802
145
1.8
145
85
3
374
52
2
9
36
1.47
9637--9990
181
2.0
174
87
5
507
52
3
8
35
1.48
11933--11999
31
2.2
31
84
10
84
19
17
14
47
1.82
12126--12205
29
2.7
29
88
3
106
40
12
18
28
1.87
15586--15637
25
2.0
26
92
3
88
46
17
5
30
1.71
15709--15791
41
2.0
41
97
0
157
33
18
9
38
1.83
18065--18144
41
2.0
40
87
7
117
15
10
21
53
1.70
20220--20245
3
8.7
3
100
0
52
30
0
0
69
0.89
25761--25792
12
2.7
12
100
0
64
50
18
12
18
1.78
27336--27436
51
2.0
50
90
5
159
26
8
16
47
1.76

Tables:   1

The End!