Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011872.1 Corchorus olitorius cultivar O-4 contig11905, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68035

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1459--1678
69
3.2
68
62
16
153
57
10
19
12
1.64
1413--1696
139
2.0
140
96
0
525
57
11
18
12
1.65
4966--4999
7
4.9
7
100
0
68
14
14
41
29
1.86
10044--10102
6
10.0
6
85
10
86
84
15
0
0
0.62
10046--10102
30
1.9
30
92
7
98
85
14
0
0
0.59
16575--16621
22
2.1
22
96
0
85
31
6
8
53
1.57
25788--25865
3
26.0
3
100
0
156
66
0
0
33
0.92
32810--32927
49
2.4
49
83
7
141
47
5
21
26
1.71
35505--35552
15
3.2
15
71
11
53
10
27
22
39
1.87
36603--36641
15
2.6
15
87
0
51
12
25
28
33
1.93
37377--37500
49
2.5
49
85
6
155
45
6
20
28
1.75
40059--40122
28
2.3
29
81
5
78
51
4
3
40
1.38
41512--41544
15
2.2
16
89
10
52
3
45
6
45
1.43
45327--45377
19
2.6
19
84
6
57
31
17
13
37
1.89
49841--49871
6
5.2
6
92
0
53
29
0
54
16
1.42
54155--54409
133
1.9
133
88
7
387
50
2
9
37
1.49
64940--64994
13
4.2
13
83
6
67
85
1
12
0
0.68

Tables:   1

The End!