Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011880.1 Corchorus olitorius cultivar O-4 contig11913, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72762

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5083--5128
18
2.6
18
82
0
56
26
17
13
43
1.85
15367--15408
22
1.9
22
100
0
84
23
7
26
42
1.80
16491--16518
2
14.0
2
100
0
56
50
0
0
50
1.00
22627--22697
37
1.9
37
82
0
88
23
28
18
29
1.98
25540--25572
15
2.2
16
89
10
52
69
0
6
24
1.10
26809--26854
3
16.3
3
86
13
71
69
0
0
30
0.89
26809--26853
19
2.3
19
96
3
81
68
0
0
31
0.89
26809--26869
22
3.2
19
79
20
65
68
0
1
29
0.99
26920--26982
32
2.0
31
84
3
81
46
0
0
53
1.00
34540--34592
12
4.5
11
81
13
52
28
1
11
58
1.43
44089--44347
127
2.0
127
89
8
400
37
10
1
50
1.46
45946--46002
19
3.1
19
97
2
107
59
0
8
31
1.28
45933--46002
19
3.8
18
90
7
97
60
0
7
32
1.24
46088--46124
19
2.0
19
94
5
67
67
0
0
32
0.91
49284--49366
40
2.1
40
97
0
157
7
20
26
45
1.77
49322--49584
75
3.5
74
72
12
196
19
23
16
41
1.90
57320--57381
30
2.1
30
90
0
97
24
30
6
38
1.80
57825--57869
23
2.0
23
90
0
72
42
15
13
28
1.85
59382--59422
18
2.3
18
91
4
66
53
26
0
19
1.45
64083--64121
17
2.3
17
100
0
78
43
23
23
10
1.84
72158--72425
131
2.1
128
85
5
360
38
10
1
49
1.47

Tables:   1

The End!