Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011882.1 Corchorus olitorius cultivar O-4 contig11915, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96665

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
661--692
11
2.6
13
90
9
50
15
6
3
75
1.14
2649--2692
6
7.0
6
85
10
61
79
13
2
4
0.98
2640--2692
26
2.0
26
85
7
72
77
16
1
3
1.01
9953--10095
31
4.6
31
91
5
243
30
19
9
39
1.84
9953--10095
63
2.3
62
95
1
250
30
19
9
39
1.84
11067--11105
20
2.0
20
94
0
69
28
10
20
41
1.85
20296--20336
21
2.0
21
100
0
82
39
19
19
21
1.93
24899--24923
10
2.5
10
100
0
50
44
28
0
28
1.55
27138--27211
28
2.7
27
85
4
94
39
16
17
27
1.91
27172--27241
26
2.7
26
81
2
77
41
22
14
21
1.89
37656--37698
13
3.4
13
77
6
52
58
16
6
18
1.60
43147--43184
15
2.5
15
95
4
67
13
13
13
60
1.59
65366--65517
76
2.0
76
81
7
175
15
27
30
26
1.96
67982--68138
78
2.0
78
100
0
314
24
28
13
34
1.93
69573--69624
27
1.9
27
92
0
86
17
19
3
59
1.52
69614--70018
47
8.5
47
88
3
571
28
20
5
46
1.72
69985--70050
32
2.1
32
97
0
123
22
21
3
53
1.60
69891--70410
126
4.0
126
86
8
729
27
20
5
47
1.70
69938--70097
79
2.0
79
93
2
277
26
20
4
48
1.68
70017--70144
47
2.7
47
93
0
211
28
18
4
47
1.69
70064--70223
79
2.0
79
87
0
230
27
18
5
48
1.69
70111--70173
32
2.0
32
87
0
90
25
17
3
53
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70143--70457
47
6.7
47
92
0
506
28
20
5
45
1.73
70143--70457
140
2.2
140
93
1
540
28
20
5
45
1.73
80994--81029
19
1.9
18
88
5
54
33
22
2
41
1.68
82042--82091
21
2.3
20
80
12
55
40
0
28
32
1.57
92045--92081
5
7.6
5
87
6
58
78
21
0
0
0.75
92045--92081
15
2.6
14
95
4
65
78
21
0
0
0.75
96150--96327
60
3.0
60
94
2
295
44
11
14
28
1.80
96523--96598
29
2.7
29
87
2
109
44
23
14
17
1.85

Tables:   1

The End!