Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011884.1 Corchorus olitorius cultivar O-4 contig11917, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9813
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33


Found at i:45 original size:13 final size:13

Alignment explanation


    Indices: 27--51  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

         17 ATTATTCAAA

                         
         27 TTTAAATAATTTT
          1 TTTAAATAATTTT

                        
         40 TTTAAATAATTT
          1 TTTAAATAATTT

         52 AAATAATTTT


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60


Consensus pattern (13 bp):   
TTTAAATAATTTT

Found at i:50 original size:22 final size:22

Alignment explanation


    Indices: 24--72  Score: 80
    Period size: 22  Copynumber: 2.2  Consensus size: 22

         14 AAAATTATTC

                              *   
         24 AAATTTAAATAATTTTTTTAAA
          1 AAATTTAAATAATTTTTTAAAA

            *                     
         46 TAATTTAAATAATTTTTTAAAA
          1 AAATTTAAATAATTTTTTAAAA

                 
         68 AAATT
          1 AAATT

         73 GATCTAGGCA


Statistics
Matches: 24,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  22   24  1.00

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (22 bp):   
AAATTTAAATAATTTTTTAAAA
Done.