Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011892.1 Corchorus olitorius cultivar O-4 contig11925, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5947

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102--142
10
4.1
10
80
0
55
58
21
2
17
1.50
101--139
20
2.0
20
94
0
69
64
17
2
15
1.41
2164--2231
27
2.5
27
90
4
93
19
45
14
20
1.85
2175--2231
27
2.1
27
96
0
105
21
43
14
21
1.87
2490--2566
26
3.2
25
69
25
76
51
10
0
37
1.36
2508--2558
19
2.8
18
93
3
84
52
9
0
37
1.34
2526--2579
27
2.0
26
85
3
72
57
11
0
31
1.34
3361--3617
107
2.5
103
86
7
362
42
8
8
40
1.66
3361--3638
103
2.7
102
83
9
366
42
7
8
41
1.65
5659--5701
16
2.7
16
88
0
68
34
41
16
6
1.75
5692--5746
17
3.2
17
92
0
83
23
47
27
1
1.62

Tables:   1

The End!