Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011903.1 Corchorus olitorius cultivar O-4 contig11936, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50116

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2985--3063
12
6.8
12
68
23
53
45
2
1
50
1.23
2986--3063
23
3.4
22
79
12
77
44
2
1
51
1.23
18378--18429
22
2.4
22
90
0
77
5
34
36
23
1.79
18545--18570
11
2.4
11
100
0
52
92
0
0
7
0.39
18532--18578
13
3.5
13
80
16
51
85
0
6
8
0.75
24736--24779
23
1.9
23
90
0
70
31
27
20
20
1.97
32675--32894
22
10.0
22
73
8
153
39
18
10
32
1.84
32675--32894
66
3.3
65
76
8
212
39
18
10
32
1.84
32915--32959
22
2.1
21
84
8
56
35
22
2
40
1.66
33025--33255
22
10.5
22
70
10
114
34
12
10
41
1.78
34899--34990
3
30.7
3
97
0
175
66
0
1
32
0.99
39836--39877
15
2.7
15
92
3
66
11
9
14
64
1.50
42662--42720
19
3.0
19
83
9
82
32
20
10
37
1.86
44468--44628
81
2.0
81
86
0
223
36
11
14
37
1.82
44718--44761
18
2.4
18
85
7
54
43
2
2
52
1.26

Tables:   1

The End!