Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011904.1 Corchorus olitorius cultivar O-4 contig11937, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30475

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16953--16978
6
4.3
6
100
0
52
15
50
15
19
1.79
18318--18411
48
2.0
48
97
0
179
48
11
13
25
1.76
18461--18490
2
15.5
2
93
6
53
50
0
0
50
1.00
21053--21246
22
8.8
22
68
13
94
39
8
13
38
1.75
21053--21137
44
1.9
44
85
0
116
34
9
15
41
1.79
21121--21224
44
2.4
45
79
9
124
46
7
9
36
1.66
21165--21290
22
5.5
22
70
14
71
38
7
16
37
1.76
21409--21662
22
11.7
22
74
8
173
33
11
16
38
1.84
23078--23127
2
24.5
2
90
8
75
46
2
2
50
1.24
23247--23285
19
2.1
19
85
9
53
35
15
20
28
1.93
25523--25841
144
2.2
144
83
3
401
38
14
24
22
1.92
26751--26816
30
2.2
30
81
8
71
22
13
6
57
1.58

Tables:   1

The End!