Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011905.1 Corchorus olitorius cultivar O-4 contig11938, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21245

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2272--2305
14
2.3
15
95
5
61
79
11
2
5
1.02
2848--2886
15
2.5
16
88
12
55
64
10
12
12
1.51
3866--3892
12
2.2
12
100
0
54
22
33
14
29
1.94
10469--10543
39
1.9
39
91
0
123
4
14
37
44
1.64
10665--10894
118
1.9
119
84
2
311
39
11
16
32
1.85
14651--14719
2
33.5
2
85
11
95
47
5
0
46
1.26
15814--15895
43
1.9
43
85
5
112
31
14
10
42
1.81
16061--16135
35
2.1
37
82
9
93
22
17
4
56
1.58
16937--17182
106
2.3
107
92
0
404
40
9
7
42
1.66
16937--17215
106
2.6
105
86
6
368
40
10
6
42
1.65
17884--17933
25
2.0
25
92
0
82
42
18
0
40
1.50
20787--21236
200
2.3
199
87
4
638
34
13
17
34
1.89

Tables:   1

The End!