Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011912.1 Corchorus olitorius cultivar O-4 contig11945, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63296

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12187--12260
25
3.0
25
93
0
130
37
20
28
13
1.90
12776--13097
175
1.8
176
86
6
472
31
12
22
33
1.91
21513--21556
18
2.5
17
82
17
54
20
0
0
79
0.73
27731--27843
57
2.0
56
98
1
217
28
15
15
40
1.88
28432--28500
36
1.9
36
96
0
129
21
17
15
44
1.86
29002--29073
32
2.2
32
82
4
83
23
12
16
47
1.81
30624--30656
2
16.5
2
100
0
66
51
0
0
48
1.00
31618--31650
10
3.3
10
100
0
66
48
24
27
0
1.51
39174--39213
20
2.0
21
85
14
57
52
5
22
20
1.65
44071--44165
45
2.1
45
90
3
147
29
11
25
33
1.91
46176--46210
18
1.9
18
94
0
61
14
54
5
25
1.62
54176--54526
174
2.0
175
97
0
668
37
20
21
19
1.94

Tables:   1

The End!