Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011913.1 Corchorus olitorius cultivar O-4 contig11946, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31330

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
492--558
29
2.3
29
97
0
125
22
16
4
56
1.58
3330--3357
2
14.0
2
100
0
56
50
0
0
50
1.00
4164--4189
5
5.2
5
100
0
52
42
57
0
0
0.98
7043--7089
24
2.0
24
83
8
60
29
8
23
38
1.84
12067--12100
17
2.0
17
94
0
59
29
8
17
44
1.79
12337--12361
13
1.9
13
100
0
50
56
4
16
24
1.57
15596--15641
18
2.5
19
89
6
69
13
13
8
65
1.48
17131--17497
29
12.9
29
81
2
381
18
19
23
38
1.93
25455--25503
25
2.0
25
84
8
64
32
20
14
32
1.92

Tables:   1

The End!