Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01011919.1 Corchorus olitorius cultivar O-4 contig11952, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8574
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.39
Found at i:605 original size:154 final size:154
Alignment explanation
Indices: 4--1187 Score: 1659
Period size: 154 Copynumber: 7.6 Consensus size: 154
1 GAA
* * * * *
4 TTGGCAAACATCAATTCTTTTCTTTCCATTGTGTATGGCCTAACTATAATCTATTTTAGTCAGAT
1 TTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATC-ATTTTGGTGAGAT
* * *
69 TAGTCCATTGTGTAAGTTTTTAGCTCTATTTGGAACTACTTTTTATTTTGGGCCAAGTCGGGGCC
65 TAGTCCACTGTG-AAGTTTTTAGCTC-ATTTGGAAC-ACTTGTTATTTTGGGCCTA-TCGGGGCC
*
134 CATTAGTGTACGTTTTGAATCGTATTCGAT
126 CATTAGTG-ACGTTTTGAATCGTCTTCGAT
* *
164 TTGGCAACCCTCAATGTCTTTTC-TTCCATTGTTTATGTCCTAACTATAATCTATTTTGGTGAGA
1 TTGGCAAACCTCAATG-CTTTTCTTTCCATTGTTTATGGCCTAACTATAATC-ATTTTGGTGAGA
*
228 TTAGTCCACTGTGTAAG-TTTTAGTTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCA
64 TTAGTCCACTGTG-AAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCA
**
292 TTAGTTCCGTTTTGAATCGTCTTCGAT
128 TTAGTGACGTTTTGAATCGTCTTCGAT
* *
319 TTGGCAACCCTCAACTGCTTTTCTTTCCTATTGTTTATTGACCTAACTATAATCATTTTGGTGAG
1 TTGGCAAACCTCAA-TGCTTTTCTTTCC-ATTGTTTA-TGGCCTAACTATAATCATTTTGGTGAG
384 ATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCA
63 ATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCA
449 TTAGTGACGTTTTGAATCGTCTTCGAT
128 TTAGTGACGTTTTGAATCGTCTTCGAT
* * * ** * *
476 TTGGCAAACCTCAAAGCTTTTCTTTCAATTTTTTACT-AACTAAATATAATGATTTTGGTGAGAT
1 TTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTA-TGGCCTAACTATAATCATTTTGGTGAGAT
* * * *
540 TAGTCCACTATGAAGTTTTTACCTCATTCT-GAACACTTGTTATTTTGGGCCTATCGAGTCCCAT
65 TAGTCCACTGTGAAGTTTTTAGCTCATT-TGGAACACTTGTTATTTTGGGCCTATCGGGGCCCAT
*
604 TAGTGACGTTTTGAATCGTCTTGGGAT
129 TAGTGACGTTTTGAATCGTCTT-CGAT
*
631 TTGGGAAACCTCAATGC-TTTC-TTCCATTG-TTATGGCCTAACTATAATCATTTTGGTGTAGAT
1 TTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTG-AGAT
*
693 TAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATTGGGGCCCATT
65 TAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATT
*
758 AGTGACGTTTTGAATCCTCTTCGAT
130 AGTGACGTTTTGAATCGTCTTCGAT
* *
783 TTGGCAAACCACAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTGGGTGAGATT
1 TTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATT
* * *
848 AGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCATTTCGGGGCCCAATA
66 AGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTA
* *
913 GTGACGTTTTCAATCATCTTCGAT
131 GTGACGTTTTGAATCGTCTTCGAT
* * *
937 TTGGCAAACCTCAATTG-TTTTTTTTCCTATTGTTTATTGCCTAACTATAATCATTTTGGTAAGA
1 TTGGCAAACCTCAA-TGCTTTTCTTTCC-ATTGTTTATGGCCTAACTATAATCATTTTGGTGAGA
* * * * *
1001 TTAGCCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTACTTTGGGCCTACCGGGGTCCGT
64 TTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCAT
**
1066 TAGTTCCGTTTT-AATCGTCTTCGAT
129 TAGTGACGTTTTGAATCGTCTTCGAT
* * * *
1091 TTGGCAAACCCCAATGCTTTTCTTTCCATT-TTTATGTCCTAACAATAATCCTTTTGGTGAGATT
1 TTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATT
1155 AGTCCACTCGTGAAGTTTTTAGCTCATTTGGAA
66 AGTCCACT-GTGAAGTTTTTAGCTCATTTGGAA
1188 TAGTGACGTT
Statistics
Matches: 927, Mismatches: 79, Indels: 43
0.88 0.08 0.04
Matches are distributed among these distances:
151 1 0.00
152 77 0.08
153 121 0.13
154 260 0.28
155 195 0.21
156 35 0.04
157 134 0.14
158 24 0.03
159 8 0.01
160 66 0.07
161 6 0.01
ACGTcount: A:0.22, C:0.19, G:0.18, T:0.41
Consensus pattern (154 bp):
TTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATT
AGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTA
GTGACGTTTTGAATCGTCTTCGAT
Found at i:770 original size:307 final size:309
Alignment explanation
Indices: 4--1187 Score: 1633
Period size: 307 Copynumber: 3.8 Consensus size: 309
1 GAA
* * * *
4 TTGGCAAACATCAA-TTCTTTTCTTTCC-ATTGTGTATGGCCTAACTATAATCTATTTTAGTCAG
1 TTGGCAAACCTCAACTGCTTTTCTTTCCTATTGTTTATGGCCTAACTATAATC-ATTTTGGT-AG
* * *
67 ATTAGTCCATTGTGTAAGTTTTTAGCTCTATTTGGAACTACTTTTTATTTTGGGCCAAGTCGGGG
64 ATTAGTCCACTGTG-AAGTTTTTAGCTC-ATTTGGAAC-ACTTGTTATTTTGGGCCTA-TCGGGG
* *
132 CCCATTAGTGTACGTTTTGAATCGTATTCGATTTGGCAACCCTCAATGTCTTTTC-TTCCATTGT
125 CCCATTAGTG-ACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATG-CTTTTCTTTCCATTGT
* *
196 TTATGTCCTAACTATAATCTATTTTGGTGAGATTAGTCCACTGTGTAAG-TTTTAGTTCATTTGG
188 TTATGTCCTAAATATAATC-ATTTTGGTGAGATTAGTCCACTGTG-AAGTTTTTAGCTCATTTGG
**
260 AACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGAT
251 AACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGAT
* *
319 TTGGCAACCCTCAACTGCTTTTCTTTCCTATTGTTTATTGACCTAACTATAATCATTTTGGTGAG
1 TTGGCAAACCTCAACTGCTTTTCTTTCCTATTGTTTA-TGGCCTAACTATAATCATTTTGGT-AG
384 ATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCA
64 ATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCA
* * *
449 TTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAAAGCTTTTCTTTCAATTTTTTACT-
129 TTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTA-TG
** * * *
513 AACTAAATATAATGATTTTGGTGAGATTAGTCCACTATGAAGTTTTTACCTCATTCT-GAACACT
193 TCCTAAATATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATT-TGGAACACT
* * *
577 TGTTATTTTGGGCCTATCGAGTCCCATTAGTGACGTTTTGAATCGTCTTGGGAT
257 TGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTT-CGAT
*
631 TTGGGAAACCTCAA-TGC-TTTC-TTCC-ATTG-TTATGGCCTAACTATAATCATTTTGGTGTAG
1 TTGGCAAACCTCAACTGCTTTTCTTTCCTATTGTTTATGGCCTAACTATAATCATTTT-G-GTAG
*
691 ATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATTGGGGCCCA
64 ATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCA
* * *
756 TTAGTGACGTTTTGAATCCTCTTCGATTTGGCAAACCACAATGCTTTTCTTTCCATTGTTTATGG
129 TTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGT
* *
821 CCTAACTATAATCATTTGGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTG
194 CCTAAATATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTG
* * * * *
886 TTATTTTGGGCATTTCGGGGCCCAATAGTGACGTTTTCAATCATCTTCGAT
259 TTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGAT
* * *
937 TTGGCAAACCTCAATTG-TTTTTTTTCCTATTGTTTATTGCCTAACTATAATCATTTTGGTAAGA
1 TTGGCAAACCTCAACTGCTTTTCTTTCCTATTGTTTATGGCCTAACTATAATCATTTTGGT-AGA
* * * * *
1001 TTAGCCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTACTTTGGGCCTACCGGGGTCCGT
65 TTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCAT
** *
1066 TAGTTCCGTTTT-AATCGTCTTCGATTTGGCAAACCCCAATGCTTTTCTTTCCATT-TTTATGTC
130 TAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGTC
*
1129 CTAACA-ATAATCCTTTTGGTGAGATTAGTCCACTCGTGAAGTTTTTAGCTCATTTGGAA
195 CTAA-ATATAATCATTTTGGTGAGATTAGTCCACT-GTGAAGTTTTTAGCTCATTTGGAA
1188 TAGTGACGTT
Statistics
Matches: 781, Mismatches: 68, Indels: 47
0.87 0.08 0.05
Matches are distributed among these distances:
306 38 0.05
307 266 0.34
308 77 0.10
309 81 0.10
310 30 0.04
311 95 0.12
312 70 0.09
313 17 0.02
314 17 0.02
315 21 0.03
316 25 0.03
317 29 0.04
318 15 0.02
ACGTcount: A:0.22, C:0.19, G:0.18, T:0.41
Consensus pattern (309 bp):
TTGGCAAACCTCAACTGCTTTTCTTTCCTATTGTTTATGGCCTAACTATAATCATTTTGGTAGAT
TAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATT
AGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGTCC
TAAATATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTT
ATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGAT
Found at i:1323 original size:123 final size:122
Alignment explanation
Indices: 1074--1309 Score: 370
Period size: 123 Copynumber: 1.9 Consensus size: 122
1064 GTTAGTTCCG
*
1074 TTTT-AATCGTCTTCGATTTGGCAAACCCCAATGCTTTTCTTTCCATTTTTATGTCCTAACAATA
1 TTTTGAATCGTCTTCGATTTGGCAAACCCCAATGCTTTTCTTTCCATTTTTATGGCCTAACAATA
* * * *
1138 ATCCTTTTGGTGAGATTAGTCCACTCGTGAAGTTTTTAGCTCATTTGGAATAGTGAC
66 ATCATTTAGGTGAGATTACTCCACTCGTGAAGTTTTTAGCTCATTTAGAATAGTGAC
**
1195 GTTTTGAATCGTCTTCGATTTGGCAAACCCCAATGCTTTT-TTTCCATTGTTTATGGCCTAATTA
1 -TTTTGAATCGTCTTCGATTTGGCAAACCCCAATGCTTTTCTTTCCATT-TTTATGGCCTAACAA
1259 TAATCATTTAGGTGAGATTACTCCACT-GTGAAGTTTTTAGCTCATTTAGAA
64 TAATCATTTAGGTGAGATTACTCCACTCGTGAAGTTTTTAGCTCATTTAGAA
1310 CCCTTGTTAT
Statistics
Matches: 105, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
122 35 0.33
123 70 0.67
ACGTcount: A:0.24, C:0.19, G:0.16, T:0.42
Consensus pattern (122 bp):
TTTTGAATCGTCTTCGATTTGGCAAACCCCAATGCTTTTCTTTCCATTTTTATGGCCTAACAATA
ATCATTTAGGTGAGATTACTCCACTCGTGAAGTTTTTAGCTCATTTAGAATAGTGAC
Found at i:1600 original size:430 final size:430
Alignment explanation
Indices: 757--1616 Score: 1379
Period size: 430 Copynumber: 2.0 Consensus size: 430
747 TGGGGCCCAT
757 TAGTGACGTTTTGAATCCTCTTCGATTTGGCAAACCACAATGCTTTTCTTTCCATTGTTTATGGC
1 TAGTGACGTTTTGAATCCTCTTCGATTTGGCAAACCACAATGCTTTTCTTTCCATTGTTTATGGC
* * *
822 CTAACTATAATCATTTGGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGT
66 CTAACTATAATCATTTAGGTGAGATTACTCCACTGTGAAGTTTTTAGCTCATTTAGAACACTTGT
887 TATTTTGGGCATTTCGGGGCCCAATAGTGACGTTTTCAATCATCTTCGATTTGGCAAACCTCAAT
131 TATTTTGGGCATTTCGGGGCCCAATAGTGACGTTTTCAATCATCTTCGATTTGGCAAACCTCAAT
* *
952 TGTTTTTTTTCCTATTGTTTATTGCCTAACTATAATCATTTTGGTAAGATTAGCCCACTGTGAAG
196 TGTCTTTTTTCCTATTGTTTATGGCCTAACTATAATCATTTTGGTAAGATTAGCCCACTGTGAAG
* * * **
1017 TTTTTAGCTCATTTGGAACACTTGTTACTTTGGGCCTACCGGGGTCCGTTAGTTCCGTTTTAATC
261 TTTTTAGCTCATTTGCAACACTTGTTACTTTGGGCCTACCGGGGCCCATTAGTGACGTTTTAATC
*
1082 GTCTTCGATTTGGCAAACCCCAATGCTTTTCTTTCCATTTTTATGTCCTAACAATAATCCTTTTG
326 GTCTTCGATTTGGCAAACCCCAATGCTTTTCTTTCCATTTTTATGGCCTAACAATAATCCTTTTG
1147 GTGAGATTAGTCCACTCGTGAAGTTTTTAGCTCATTTGGAA
391 GTGAGATTAGTCCACTCGTGAAG-TTTTAGCTCATTTGGAA
* *
1188 TAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCCCAATGCTTTT-TTTCCATTGTTTATGGC
1 TAGTGACGTTTTGAATCCTCTTCGATTTGGCAAACCACAATGCTTTTCTTTCCATTGTTTATGGC
* *
1252 CTAATTATAATCATTTAGGTGAGATTACTCCACTGTGAAGTTTTTAGCTCATTTAGAACCCTTGT
66 CTAACTATAATCATTTAGGTGAGATTACTCCACTGTGAAGTTTTTAGCTCATTTAGAACACTTGT
* * **
1317 TATTTTGGGCCTTTCGGGGCCCATTAGTTCCGTTTTCAAT-ACTCTTCGATTTGGCAAACCTCAA
131 TATTTTGGGCATTTCGGGGCCCAATAGTGACGTTTTCAATCA-TCTTCGATTTGGCAAACCTCAA
* * **
1381 -TGTCTTTTTTCC-ATTGTTTATGGCCTAACTATAATCCTTTTTGGTGAGATTAGTTCACTGTGA
195 TTGTCTTTTTTCCTATTGTTTATGGCCTAACTATAAT-CATTTTGGTAAGATTAGCCCACTGTGA
* **
1444 AGTTTTTAGCTCATTTGCAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTGACGTTTTGA
259 AGTTTTTAGCTCATTTGCAACACTTGTTACTTTGGGCCTACCGGGGCCCATTAGTGACGTTTT-A
* *
1509 ATCGTCTTCGGTTTGGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCCT
323 ATCGTCTTCGATTTGGCAAACCCCAATGCTTTTCTTTCCATT-TTTATGGCCTAACAATAATCCT
*
1574 TTTGGTGAGATTAGTCCACT-GTGAAGTTTTAGGTCATTTGGAA
387 TTTGGTGAGATTAGTCCACTCGTGAAGTTTTAGCTCATTTGGAA
1617 CACTTGTTAC
Statistics
Matches: 396, Mismatches: 29, Indels: 10
0.91 0.07 0.02
Matches are distributed among these distances:
428 22 0.06
429 106 0.27
430 183 0.46
431 85 0.21
ACGTcount: A:0.21, C:0.19, G:0.18, T:0.41
Consensus pattern (430 bp):
TAGTGACGTTTTGAATCCTCTTCGATTTGGCAAACCACAATGCTTTTCTTTCCATTGTTTATGGC
CTAACTATAATCATTTAGGTGAGATTACTCCACTGTGAAGTTTTTAGCTCATTTAGAACACTTGT
TATTTTGGGCATTTCGGGGCCCAATAGTGACGTTTTCAATCATCTTCGATTTGGCAAACCTCAAT
TGTCTTTTTTCCTATTGTTTATGGCCTAACTATAATCATTTTGGTAAGATTAGCCCACTGTGAAG
TTTTTAGCTCATTTGCAACACTTGTTACTTTGGGCCTACCGGGGCCCATTAGTGACGTTTTAATC
GTCTTCGATTTGGCAAACCCCAATGCTTTTCTTTCCATTTTTATGGCCTAACAATAATCCTTTTG
GTGAGATTAGTCCACTCGTGAAGTTTTAGCTCATTTGGAA
Found at i:1658 original size:153 final size:153
Alignment explanation
Indices: 1188--1740 Score: 833
Period size: 153 Copynumber: 3.6 Consensus size: 153
1178 TCATTTGGAA
1188 TAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCCCAATGCTTTTTTTCCATTGTTTATGGCC
1 TAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCCCAATGCTTTTTTTCCATTGTTTATGGCC
* * * * *
1253 TAATTATAATCATTTAGGTGAGATTACTCCACTGTGAAGTTTTTAGCTCATTTAGAACCCTTGTT
66 TAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTT
1318 ATTTTGGGCCTTTCGGGGCCCAT
131 ATTTTGGGCCTTTCGGGGCCCAT
** * *
1341 TAGTTCCGTTTTCAATAC-TCTTCGATTTGGCAAACCTCAATG-TCTTTTTTCCATTGTTTATGG
1 TAGTGACGTTTTGAAT-CGTCTTCGATTTGGCAAACCCCAATGCT-TTTTTTCCATTGTTTATGG
* * *
1404 CCTAACTATAATCCTTTTTGGTGAGATTAGTTCACTGTGAAGTTTTTAGCTCATTTGCAACACTT
64 CCTAACTATAAT-CATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTT
1469 GTTATTTTGGGCCTTTCGGGGCCCAT
128 GTTATTTTGGGCCTTTCGGGGCCCAT
*
1495 TAGTGACGTTTTGAATCGTCTTCGGTTTGGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGGC
1 TAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCCCAATGCTTTT-TTTCCATTGTTTATGGC
* *
1560 CTAACTATAATCCTTTTGGTGAGATTAGTCCACTGTGAAG-TTTTAGGTCATTTGGAACACTTGT
65 CTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGT
* ** *
1624 TACTTTGGGCCTACCGGGGCCCGT
130 TATTTTGGGCCTTTCGGGGCCCAT
* * *
1648 TAGTGACGTTTTGAATCGTCTTCGATTTGGCATACCTCAATGCTTTTCTTTCCATTGATTATGGC
1 TAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCCCAATGCTTTT-TTTCCATTGTTTATGGC
*
1713 CTAACTATAATCATTTTGGTGAGGTTAG
65 CTAACTATAATCATTTTGGTGAGATTAG
1741 GGCAACGAAG
Statistics
Matches: 363, Mismatches: 31, Indels: 12
0.89 0.08 0.03
Matches are distributed among these distances:
152 1 0.00
153 196 0.54
154 137 0.38
155 29 0.08
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.41
Consensus pattern (153 bp):
TAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCCCAATGCTTTTTTTCCATTGTTTATGGCC
TAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTT
ATTTTGGGCCTTTCGGGGCCCAT
Found at i:1732 original size:584 final size:584
Alignment explanation
Indices: 4--1740 Score: 2086
Period size: 584 Copynumber: 2.9 Consensus size: 584
1 GAA
** * *
4 TTGGCAAACATCAATTCTTTTCTTTCCATTGTGTATGGCCTAACTATAATCTATTTTA-GT-CAG
1 TTGGCAAACCCCAATGC-TTTC-TTCCATTGT-TATGGCCTAACTATAATC-A-TTTAGGTGTAG
* * * * * *
67 ATTAGTCCATTGTGTAAGTTTTTAGCTCTATTTGGAACTACTTTTTATTTTGGGCCAAGTCGGGG
61 ATTACTCCACTGTG-AAGTTTTTAGCTC-ATTTAGAAC-ACTTGTTATTTTGGGCCTA-TTGGGG
* * * *
132 CCCATTAGTGTACGTTTTGAAT-CGTATTCGATTTGGCAACCCTCAATGTCTTTTC-TTCCATTG
122 CCCATTAGTG-ACGTTTTCAATAC-TCTTCGATTTGGCAAACCACAATG-CTTTTCTTTCCATTG
* * *
195 TTTATGTCCTAACTATAATCTATTTTGGTGAGATTAGTCCACTGTGTAAG-TTTTAGTTCATTTG
184 TTTATGGCCTAACTATAATC-ATTTGGGTGAGATTAGTCCACTGTG-AAGTTTTTAGCTCATTTG
* * * * ** * *
259 GAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGC
247 CAACACTTGTTATTTTGGGCATTTCGGGGCCCAATAGTGACGTTTTCAATCATCTTCGATTTGGC
* * *
324 -AACCCTCAACTGCTTTTCTTTCCTATTGTTTATTGACCTAACTATAATCATTTTGGTGAGATTA
312 AAACCC-CAATTG-TTTTCTTTCCTATTGTTTA-TGGCCTAACTATAATCATTTTGGTAAGATTA
* * * *
388 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAG
374 GCCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTACTTTGGGCCTACCGGGGCCCGTTAG
* * * * **
453 TGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAAAGCTTTTCTTTCAATTTTTTACT-AACT
439 TGACGTTTT-AATCGTCTTCGATTTGGCAAACCCCAATGCTTTTCTTTCCA-TTATTA-TGGCCT
* *
517 AA-ATATAATGATTTTGGTGAGATTAGTCCACT-ATGAAGTTTTTACCTCATTCTGAACACTTGT
501 AACA-ATAATCATTTTGGTGAGATTAGTCCACTCGTGAAG-TTTT---T-A----G----C---T
* *
580 TATTTTGGGCCTATCGAGTCCCATTAGTGACGTTTTGAATCGTCTTGGGAT
549 CA-TTT--G------GA-----A-TAGTGACGTTTTGAATCGTCTTGCGAT
* * * *
631 TTGGGAAACCTCAATGCTTTCTTCCATTGTTATGGCCTAACTATAATCATTTTGGTGTAGATTAG
1 TTGGCAAACCCCAATGCTTTCTTCCATTGTTATGGCCTAACTATAATCATTTAGGTGTAGATTAC
*
696 TCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATTGGGGCCCATTAGT
66 TCCACTGTGAAGTTTTTAGCTCATTTAGAACACTTGTTATTTTGGGCCTATTGGGGCCCATTAGT
* *
761 GACGTTTTGAATCCTCTTCGATTTGGCAAACCACAATGCTTTTCTTTCCATTGTTTATGGCCTAA
131 GACGTTTTCAATACTCTTCGATTTGGCAAACCACAATGCTTTTCTTTCCATTGTTTATGGCCTAA
*
826 CTATAATCATTTGGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATT
196 CTATAATCATTTGGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGCAACACTTGTTATT
*
891 TTGGGCATTTCGGGGCCCAATAGTGACGTTTTCAATCATCTTCGATTTGGCAAACCTCAATTGTT
261 TTGGGCATTTCGGGGCCCAATAGTGACGTTTTCAATCATCTTCGATTTGGCAAACCCCAATTGTT
* *
956 TTTTTTCCTATTGTTTATTGCCTAACTATAATCATTTTGGTAAGATTAGCCCACTGTGAAGTTTT
326 TTCTTTCCTATTGTTTATGGCCTAACTATAATCATTTTGGTAAGATTAGCCCACTGTGAAGTTTT
* **
1021 TAGCTCATTTGGAACACTTGTTACTTTGGGCCTACCGGGGTCCGTTAGTTCCGTTTTAATCGTCT
391 TAGCTCATTTGGAACACTTGTTACTTTGGGCCTACCGGGGCCCGTTAGTGACGTTTTAATCGTCT
* * *
1086 TCGATTTGGCAAACCCCAATGCTTTTCTTTCCATTTTTATGTCCTAACAATAATCCTTTTGGTGA
456 TCGATTTGGCAAACCCCAATGCTTTTCTTTCCATTATTATGGCCTAACAATAATCATTTTGGTGA
1151 GATTAGTCCACTCGTGAAGTTTTTAGCTCATTTGGAATAGTGACGTTTTGAATCGTCTT-CGAT
521 GATTAGTCCACTCGTGAAGTTTTTAGCTCATTTGGAATAGTGACGTTTTGAATCGTCTTGCGAT
* *
1214 TTGGCAAACCCCAATGCTTTTTTTCCATTGTTTATGGCCTAATTATAATCATTTAGGTG-AGATT
1 TTGGCAAACCCCAATGC-TTTCTTCCATTG-TTATGGCCTAACTATAATCATTTAGGTGTAGATT
*
1278 ACTCCACTGTGAAGTTTTTAGCTCATTTAGAACCCTTGTTATTTTGGGCCT-TTCGGGGCCCATT
64 ACTCCACTGTGAAGTTTTTAGCTCATTTAGAACACTTGTTATTTTGGGCCTATT-GGGGCCCATT
** *
1342 AGTTCCGTTTTCAATACTCTTCGATTTGGCAAACCTCAATG-TCTTT-TTTCCATTGTTTATGGC
128 AGTGACGTTTTCAATACTCTTCGATTTGGCAAACCACAATGCT-TTTCTTTCCATTGTTTATGGC
* * *
1405 CTAACTATAATCCTTTTTGGTGAGATTAGTTCACTGTGAAGTTTTTAGCTCATTTGCAACACTTG
192 CTAACTATAAT-CATTTGGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGCAACACTTG
* * * * *
1470 TTATTTTGGGCCTTTCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGGTTTGGCAAACCCCAA
256 TTATTTTGGGCATTTCGGGGCCCAATAGTGACGTTTTCAATCATCTTCGATTTGGCAAACCCCAA
* * *
1535 -TGCTTTTCTTTCC-ATTGTTTATGGCCTAACTATAATCCTTTTGGTGAGATTAGTCCACTGTGA
321 TTG-TTTTCTTTCCTATTGTTTATGGCCTAACTATAATCATTTTGGTAAGATTAGCCCACTGTGA
*
1598 AG-TTTTAGGTCATTTGGAACACTTGTTACTTTGGGCCTACCGGGGCCCGTTAGTGACGTTTTGA
385 AGTTTTTAGCTCATTTGGAACACTTGTTACTTTGGGCCTACCGGGGCCCGTTAGTGACGTTTT-A
* * *
1662 ATCGTCTTCGATTTGGCATACCTCAATGCTTTTCTTTCCATTGATTATGGCCTAACTATAATCAT
449 ATCGTCTTCGATTTGGCAAACCCCAATGCTTTTCTTTCCATT-ATTATGGCCTAACAATAATCAT
*
1727 TTTGGTGAGGTTAG
513 TTTGGTGAGATTAG
1741 GGCAACGAAG
Statistics
Matches: 1009, Mismatches: 84, Indels: 77
0.86 0.07 0.07
Matches are distributed among these distances:
582 56 0.06
583 140 0.14
584 283 0.28
585 27 0.03
590 2 0.00
596 1 0.00
598 3 0.00
599 2 0.00
602 1 0.00
606 1 0.00
610 1 0.00
611 1 0.00
613 1 0.00
614 40 0.04
615 44 0.04
616 95 0.09
617 21 0.02
618 106 0.11
619 63 0.06
620 16 0.02
621 17 0.02
622 12 0.01
623 16 0.02
624 33 0.03
625 9 0.01
626 4 0.00
627 14 0.01
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.41
Consensus pattern (584 bp):
TTGGCAAACCCCAATGCTTTCTTCCATTGTTATGGCCTAACTATAATCATTTAGGTGTAGATTAC
TCCACTGTGAAGTTTTTAGCTCATTTAGAACACTTGTTATTTTGGGCCTATTGGGGCCCATTAGT
GACGTTTTCAATACTCTTCGATTTGGCAAACCACAATGCTTTTCTTTCCATTGTTTATGGCCTAA
CTATAATCATTTGGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGCAACACTTGTTATT
TTGGGCATTTCGGGGCCCAATAGTGACGTTTTCAATCATCTTCGATTTGGCAAACCCCAATTGTT
TTCTTTCCTATTGTTTATGGCCTAACTATAATCATTTTGGTAAGATTAGCCCACTGTGAAGTTTT
TAGCTCATTTGGAACACTTGTTACTTTGGGCCTACCGGGGCCCGTTAGTGACGTTTTAATCGTCT
TCGATTTGGCAAACCCCAATGCTTTTCTTTCCATTATTATGGCCTAACAATAATCATTTTGGTGA
GATTAGTCCACTCGTGAAGTTTTTAGCTCATTTGGAATAGTGACGTTTTGAATCGTCTTGCGAT
Found at i:2970 original size:154 final size:154
Alignment explanation
Indices: 2690--3664 Score: 1499
Period size: 154 Copynumber: 6.3 Consensus size: 154
2680 ATTCGTATCA
*
2690 TGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCTTTAGTGACGTTT
1 TGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTT
* * *
2755 TGAATCGTCTTCGATTTGGCAAACCTTAATGTTTTTCTTTCCATTGTTTTTGGCCTAACTATAAT
66 TGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAAT
*
2820 CAATTTGGTGAGATTAGTCCACTG
131 CATTTTGGTGAGATTAGTCCACTG
* * * *
2844 TGAAGTTTATAGCTCATTTGGAACACTTGTTATTTTGGGCATATCGGGACCCATTAGT-TCTGTT
1 TGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGAC-GTT
* * *
2908 TTGAATCGTTTTGGATTTGGCAAACCTCAATGCTTTTCTGTCCATTGTTTATGGCCTAACTATAA
65 TTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAA
*
2973 TCCTTTTGGTGAGA-TAGTCCACTG
130 TCATTTTGGTGAGATTAGTCCACTG
* * * * * *
2997 TGATGGTTTTAGCTCATTTGGAACACTTGTTATTTTAGGCATTTTGGGGCCCATTAGTGACGTTT
1 TGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTT
3062 TGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTTTTCTTTCCATTGTTTATGGCCTAACTAT
66 TGAATCGTCTTCGATTTGGCAAACCTCAATGC---TTTTCTTTCCATTGTTTATGGCCTAACTAT
3127 AATCATTTTGGTGAGATTAGTCCACTG
128 AATCATTTTGGTGAGATTAGTCCACTG
* * **
3154 TGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATGGGGGCTCATTAGTTTCGTTT
1 TGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTT
* *
3219 TGAATCGTCTTCGATTCGGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAAT
66 TGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAAT
* *
3284 CCTTTTAGTGAGATTAGTCCACTG
131 CATTTTGGTGAGATTAGTCCACTG
* * *
3308 TCAAGTTTTTAGCTCATTTGGAACACTTGTTACTTTGGGCCTATCGGGGCCCGTTAGTGACGTTT
1 TGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTT
* * * * *
3373 TGAATTGTCTTCGATTTGCCAAACCCCATTGCTTTTCTTTCCATTGTTTATGGCCTAACAATAAT
66 TGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAAT
*
3438 CCTTTTGGTGAGATTAGTCCACTG
131 CATTTTGGTGAGATTAGTCCACTG
*
3462 TGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTGACGTTT
1 TGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTT
* *
3527 TGAATCGTTTTCGATTTGGCAAACCTCAATG-TTTT-TTTCCATTGTTTATTGCCTAACTATAAT
66 TGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAAT
*
3590 CATTTTGGTGAGATTAGCCCACTG
131 CATTTTGGTGAGATTAGTCCACTG
* * *
3614 TGAAGTTTTTAGCTCATTTGGAACACTTGTTACTTTGGGCCAACCGGGGCC
1 TGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCC
3665 TGTTAGTTCC
Statistics
Matches: 747, Mismatches: 68, Indels: 14
0.90 0.08 0.02
Matches are distributed among these distances:
152 95 0.13
153 100 0.13
154 412 0.55
156 44 0.06
157 96 0.13
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (154 bp):
TGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTT
TGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAAT
CATTTTGGTGAGATTAGTCCACTG
Found at i:3732 original size:61 final size:61
Alignment explanation
Indices: 3616--3732 Score: 164
Period size: 61 Copynumber: 1.9 Consensus size: 61
3606 GCCCACTGTG
* **
3616 AAGTTTTTAGCTCATTTGGAACACTTGTTACTTTGGGCCAACCGGGGCCTGTTAGTTCCGT
1 AAGTTTTTAGCTCATTTGGAACACATGTTACTTTGGGCCAACCGGGGCCCATTAGTTCCGT
* **
3677 AAGTTTTTAGCTCATTTGGAACACATGTTATTTTGGG-CATTTCGGGGCCCATTAGT
1 AAGTTTTTAGCTCATTTGGAACACATGTTACTTTGGGCCA-ACCGGGGCCCATTAGT
3733 GACGTTTTGA
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
60 2 0.04
61 47 0.96
ACGTcount: A:0.20, C:0.19, G:0.24, T:0.38
Consensus pattern (61 bp):
AAGTTTTTAGCTCATTTGGAACACATGTTACTTTGGGCCAACCGGGGCCCATTAGTTCCGT
Found at i:3955 original size:121 final size:123
Alignment explanation
Indices: 3729--3972 Score: 393
Period size: 121 Copynumber: 2.0 Consensus size: 123
3719 CGGGGCCCAT
*
3729 TAGTGACGTTTTGAATCCTCTTCGATTTGGCAAACCGCAATGCTTTTCTTTCCATTGTTTATGGC
1 TAGTGACGTTTTGAATCCTCTTCGATTTGGCAAACCGCAATGCTTTTCTTTCCAATGTTTATGGC
* *
3794 GTAACTATAATCCTTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAA
66 CTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAA
* * * **
3852 TAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTT-TTT-TAATGTTTATTTC
1 TAGTGACGTTTTGAATCCTCTTCGATTTGGCAAACCGCAATGCTTTTCTTTCCAATGTTTATGGC
*
3915 CTAACTATAATCATTTTGGTGTGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAA
66 CTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAA
3973 CACTTGTTAT
Statistics
Matches: 112, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
121 64 0.57
122 3 0.03
123 45 0.40
ACGTcount: A:0.23, C:0.16, G:0.18, T:0.43
Consensus pattern (123 bp):
TAGTGACGTTTTGAATCCTCTTCGATTTGGCAAACCGCAATGCTTTTCTTTCCAATGTTTATGGC
CTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAA
Found at i:4134 original size:154 final size:154
Alignment explanation
Indices: 3852--4252 Score: 601
Period size: 154 Copynumber: 2.6 Consensus size: 154
3842 TCATTTGGAA
* * **
3852 TAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTT-TTT-TAATGTTTATTTC
1 TAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGC
** *
3915 CTAACTATAATCATTTTGGTGTGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGT
66 CTAACTATAATCATTTTGGTGAAATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACAATTGT
*
3980 TATTTTGGGCCTATCGGGGACCAT
131 TATTTTGGGCATATCGGGGACCAT
4004 TAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGC
1 TAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGC
* *
4069 CTAACTATAATCCTTTTGGT-AAATTTAGTCTACTGTGAAGTTTTTAGCTCATTTGGAACAATTG
66 CTAACTATAATCATTTTGGTGAAA-TTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACAATTG
* *
4133 TTATTTTGGGCATTTCGGGGCCCAT
130 TTATTTTGGGCATATCGGGGACCAT
** * *
4158 TAGTGACGTTTTGAATCGTCTTCGATCCGGCAAACCCCGATGCTTTTCTTTCCATTGTTTATGGC
1 TAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGC
* * *
4223 CTAATTATAATAATTTTGGTGAGATTAGTC
66 CTAACTATAATCATTTTGGTGAAATTAGTC
4253 AACTATTTCC
Statistics
Matches: 225, Mismatches: 20, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
152 47 0.21
153 4 0.02
154 172 0.76
155 2 0.01
ACGTcount: A:0.22, C:0.17, G:0.19, T:0.42
Consensus pattern (154 bp):
TAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGC
CTAACTATAATCATTTTGGTGAAATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACAATTGT
TATTTTGGGCATATCGGGGACCAT
Found at i:4284 original size:52 final size:51
Alignment explanation
Indices: 4206--4303 Score: 151
Period size: 52 Copynumber: 1.9 Consensus size: 51
4196 GATGCTTTTC
* *
4206 TTTCCATTGTTTATGGCCTAATTATAATAATTTTGGTGAGATTAGTCAACTA
1 TTTCCATTGTTTATGGCCTAACTATAATAATTATGGT-AGATTAGTCAACTA
* *
4258 TTTCCATTGTTTATGGCCTAACTATAATCATTATGGTTGATTAGTC
1 TTTCCATTGTTTATGGCCTAACTATAATAATTATGGTAGATTAGTC
4304 CACTGTGAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
51 8 0.19
52 34 0.81
ACGTcount: A:0.27, C:0.13, G:0.15, T:0.45
Consensus pattern (51 bp):
TTTCCATTGTTTATGGCCTAACTATAATAATTATGGTAGATTAGTCAACTA
Found at i:4408 original size:205 final size:206
Alignment explanation
Indices: 4052--4457 Score: 616
Period size: 205 Copynumber: 2.0 Consensus size: 206
4042 AATGCTTTTC
* * * **
4052 TTTCCATTGTTTATGGCCTAACTATAATCCTTTTGGTAAATTTAGTCTACTGTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTATGGTAAATTTAGTCCACTGTGAAACTTTTAGC
* * *
4117 TCATTTGGAACAATTGTTATTTTGGGCATTTCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCG
66 TCATTTGGAACAATTGTTATTTTGGGCATATCGGGGCCCATTAGTGACGTATTGAATCGACTTCG
* * * *
4182 ATCCGGCAAACCCCGATGCTTTTCTTTCCATTGTTTATGGCCTAATTATAATAATTTTGGTGAGA
131 ATCCGGAAAACCCCAATGCTTTTCTTTCCATTGTTTATAGCCTAACTATAATAATTTTGGTGAGA
4247 TTAGTCAACTA
196 TTAGTCAACTA
**
4258 TTTCCATTGTTTATGGCCTAACTATAATCATTATGGTTGA-TTAGTCCACTGTGAAACTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTATGGTAAATTTAGTCCACTGTGAAACTTTTAGC
** *
4322 TCATTTGGAACCCTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTATTGAATCGACTTCG
66 TCATTTGGAACAATTGTTATTTTGGGCATATCGGGGCCCATTAGTGACGTATTGAATCGACTTCG
** * *
4387 ATTTGGAAAACCTCAATGCTTTTCTTTCCATTGTTTATAGCCTAACTATAATCATTTTGGTGAGA
131 ATCCGGAAAACCCCAATGCTTTTCTTTCCATTGTTTATAGCCTAACTATAATAATTTTGGTGAGA
4452 TTAGTC
196 TTAGTC
4458 CACTGTGAAG
Statistics
Matches: 179, Mismatches: 21, Indels: 1
0.89 0.10 0.00
Matches are distributed among these distances:
205 143 0.80
206 36 0.20
ACGTcount: A:0.23, C:0.18, G:0.18, T:0.41
Consensus pattern (206 bp):
TTTCCATTGTTTATGGCCTAACTATAATCATTATGGTAAATTTAGTCCACTGTGAAACTTTTAGC
TCATTTGGAACAATTGTTATTTTGGGCATATCGGGGCCCATTAGTGACGTATTGAATCGACTTCG
ATCCGGAAAACCCCAATGCTTTTCTTTCCATTGTTTATAGCCTAACTATAATAATTTTGGTGAGA
TTAGTCAACTA
Found at i:4636 original size:155 final size:153
Alignment explanation
Indices: 4258--5077 Score: 1230
Period size: 154 Copynumber: 5.3 Consensus size: 153
4248 TAGTCAACTA
* * **
4258 TTTCCATTGTTTATGGCCTAACTATAATCATTATGGT-TGATTAGTCCACTGTGAAACTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* * * *
4322 TCATTTGGAACCCTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTATTGAATCGACTTCG
66 TCATTTGGAACACTTGTTATTTTGGGCCTATC-GGGACCATTAGTGACGTTTTGAATCGTCTTCG
*
4387 ATTTGGAAAACCTCAATGCTTTTC
130 ATTTGGCAAACCTCAATGCTTTTC
*
4411 TTTCCATTGTTTATAGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
*
4476 TCATTTGGAACACTTGTTATTTTGGGCCTATCGGGACACATTAGTGACGTTTTGAATCGTCTTCC
66 TCATTTGGAACACTTGTTATTTTGGGCCTATCGGGAC-CATTAGTGACGTTTTGAATCGTCTTCG
*
4541 ATTTGGCAAACCTCAAAAGCTTTTC
130 ATTTGGCAAACCTC-AATGCTTTTC
*
4566 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTATGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* * *
4631 TCATTTGGAACACTTGTTATTTTTGAGCCGT-TCGGGGCCCATTAGTGACGTTTTGAATCGTCAT
66 TCATTTGGAACACTTGTTA-TTTTGGGCC-TATC-GGGACCATTAGTGACGTTTTGAATCGTCTT
* * *
4695 CGATTTAGCAACCCTCGATGCTTTTC
128 CGATTTGGCAAACCTCAATGCTTTTC
* *
4721 TTTCCATTGTTTATAGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTGTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* * * *
4786 TCATTTGGAACACTTGATATTTTGGACCTACCGGGGACCATTAGTGTCGTTTTGAATCGTCTTCG
66 TCATTTGGAACACTTGTTATTTTGGGCCTATC-GGGACCATTAGTGACGTTTTGAATCGTCTTCG
* *
4851 ATTTGGGAAACCTCAATGCTTTTT
130 ATTTGGCAAACCTCAATGCTTTTC
*
4875 TTTCCATTGTTTATGTCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* * * * * *
4940 TAATTTGGAACACATGTAATTTTGGGCCTAACGGGGACCATTAGTGTCGTTTTGAATTGTCTTCG
66 TCATTTGGAACACTTGTTATTTTGGGCCTATC-GGGACCATTAGTGACGTTTTGAATCGTCTTCG
*
5005 ATTTGGTAAACCTCAATGCTTTTC
130 ATTTGGCAAACCTCAATGCTTTTC
*
5029 TTTCCATTGTTTATGGCGTAACTATAATCATTTTGGTGAGATTAGTCCA
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCA
5078 TTGTTTCCAG
Statistics
Matches: 609, Mismatches: 51, Indels: 13
0.90 0.08 0.02
Matches are distributed among these distances:
153 40 0.07
154 338 0.56
155 179 0.29
156 47 0.08
157 5 0.01
ACGTcount: A:0.23, C:0.18, G:0.19, T:0.40
Consensus pattern (153 bp):
TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
TCATTTGGAACACTTGTTATTTTGGGCCTATCGGGACCATTAGTGACGTTTTGAATCGTCTTCGA
TTTGGCAAACCTCAATGCTTTTC
Found at i:5086 original size:52 final size:52
Alignment explanation
Indices: 5029--5129 Score: 175
Period size: 52 Copynumber: 1.9 Consensus size: 52
5019 AATGCTTTTC
* *
5029 TTTCCATTGTTTATGGCGTAACTATAATCATTTTGGTGAGATTAGTCCATTG
1 TTTCCAGTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCATTG
*
5081 TTTCCAGTGTTTATGTCCTAACTATAATCATTTTGGTGAGATTAGTCCA
1 TTTCCAGTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCA
5130 CTGTGAAGTT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.24, C:0.15, G:0.18, T:0.44
Consensus pattern (52 bp):
TTTCCAGTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCATTG
Found at i:5238 original size:206 final size:206
Alignment explanation
Indices: 4875--5283 Score: 649
Period size: 206 Copynumber: 2.0 Consensus size: 206
4865 AATGCTTTTT
*
4875 TTTCCATTGTTTATGTCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
1 TTTCCAGTGTTTATGTCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* * *
4940 TAATTTGGAACACATGTAATTTTGGGCCTAACGGGGACCATTAGTGTCGTTTTGAATTGTCTTCG
66 TAATTCGGAACACATGTAATTTTGGGCCTAACGGGGACCATTAGTGACGTTTTGAATCGTCTTCG
** * * *
5005 ATTTGGTAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCGTAACTATAATCATTTTGGTGAGA
131 ATTTGGTAAACCTCAATGCCATTCTTTCCATTGTTTATGGCCTAACTATAATAATTTTGCTGAGA
5070 TTAGTCCATTG
196 TTAGTCCATTG
5081 TTTCCAGTGTTTATGTCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
1 TTTCCAGTGTTTATGTCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* * * *
5146 TCATTCGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTTGAATCGTCTTCG
66 TAATTCGGAACACATGTAATTTTGGGCCTAACGGGGACCATTAGTGACGTTTTGAATCGTCTTCG
* * * *
5211 ATTTGG-CAACCTTCGATGCCATTCTTTCCATTGTTTATGGCCTAACTATGATAATTTTGCTGTG
131 ATTTGGTAAACC-TCAATGCCATTCTTTCCATTGTTTATGGCCTAACTATAATAATTTTGCTGAG
5275 ATTAGTCCA
195 ATTAGTCCA
5284 CTGTGAAGTT
Statistics
Matches: 185, Mismatches: 17, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
205 4 0.02
206 181 0.98
ACGTcount: A:0.22, C:0.17, G:0.20, T:0.41
Consensus pattern (206 bp):
TTTCCAGTGTTTATGTCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
TAATTCGGAACACATGTAATTTTGGGCCTAACGGGGACCATTAGTGACGTTTTGAATCGTCTTCG
ATTTGGTAAACCTCAATGCCATTCTTTCCATTGTTTATGGCCTAACTATAATAATTTTGCTGAGA
TTAGTCCATTG
Found at i:5355 original size:154 final size:154
Alignment explanation
Indices: 5075--5591 Score: 770
Period size: 154 Copynumber: 3.4 Consensus size: 154
5065 TGAGATTAGT
* * *
5075 CCATTGTTTCCAGTGTTTATGTCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTT
1 CCATTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTT
*
5140 TTTAGCTCATTCGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTTGAATCG
66 TTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTTGAATCG
5205 TCTTCGATTTGGC-AACCTTCGATG
131 TCTTCGATTTGGCAAACC-TCGATG
* * * *
5229 CCATTCTTTCCATTGTTTATGGCCTAACTATGATAATTTTGCTGTGATTAGTCCACTGTGAAGTT
1 CCATTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTT
* *
5294 TTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGTCCATCAGTGACGTTTTGAATCG
66 TTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTTGAATCG
* *
5359 ACTTCGATTTGGCGAACCTCGATG
131 TCTTCGATTTGGCAAACCTCGATG
** *
5383 CTTTTCTTTCCATTGTTTATGTCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTT
1 CCATTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTT
* * * * *
5448 TTTAGCTAATTTGGAACACTTGTAATTTTGGGCCTAACGGGGACCATTAGTGTCGTTTTGAATTG
66 TTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTTGAATCG
*
5513 TCTTCGATTT-GCTAAACCTCAATG
131 TCTTCGATTTGGC-AAACCTCGATG
** *
5537 CTTTTTCTTTCCATTGTTTAT-GCGTAACTATAATCATTTTGGTGAGATTAGTCCA
1 C-CATTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCA
5592 TTGTTTCCAG
Statistics
Matches: 330, Mismatches: 30, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
153 2 0.01
154 305 0.92
155 23 0.07
ACGTcount: A:0.21, C:0.18, G:0.20, T:0.41
Consensus pattern (154 bp):
CCATTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTT
TTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTTGAATCG
TCTTCGATTTGGCAAACCTCGATG
Found at i:5606 original size:51 final size:51
Alignment explanation
Indices: 5544--5642 Score: 146
Period size: 51 Copynumber: 1.9 Consensus size: 51
5534 ATGCTTTTTC
* * *
5544 TTTCCATTGTTTAT-GCGTAACTATAATCATTTTGGTGAGATTAGTCCATTG
1 TTTCCAGTGTTTATGGCCTAACTATAATCATTATGGT-AGATTAGTCCATTG
*
5595 TTTCCAGTGTTTATGGCCTAACTATAATCATTATGGTTGATTAGTCCA
1 TTTCCAGTGTTTATGGCCTAACTATAATCATTATGGTAGATTAGTCCA
5643 CTGTGAAACT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
51 23 0.53
52 20 0.47
ACGTcount: A:0.24, C:0.15, G:0.17, T:0.43
Consensus pattern (51 bp):
TTTCCAGTGTTTATGGCCTAACTATAATCATTATGGTAGATTAGTCCATTG
Found at i:5772 original size:205 final size:206
Alignment explanation
Indices: 5389--5796 Score: 615
Period size: 205 Copynumber: 2.0 Consensus size: 206
5379 GATGCTTTTC
* * * **
5389 TTTCCATTGTTTATGTCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
1 TTTCCAGTGTTTATGGCCTAACTATAATCATTATGGTGAGATTAGTCCACTGTGAAACTTTTAGC
** *
5454 TAATTTGGAACACTTGTAATTTTGGGCCTAACGGGGACCATTAGTGTCGTTTTGAATTGTCTTCG
66 TAATTTGGAACACTTGTAATTTTGGGCCTAACGGGGACCATTAGTGAAGTTTTGAATCGTCTTCG
* * *
5519 ATTTGCTAAACCTCAATGCTTTTTCTTTCCATTGTTTATGCGTAACTATAATCATTTTGGTGAGA
131 ATTGGCTAAACCCCAATGCTTTTTCTTTCCATTGTTTATGCCTAACTATAATCATTTTGGTGAGA
5584 TTAGTCCATTG
196 TTAGTCCATTG
*
5595 TTTCCAGTGTTTATGGCCTAACTATAATCATTATGGT-TGATTAGTCCACTGTGAAACTTTTAGC
1 TTTCCAGTGTTTATGGCCTAACTATAATCATTATGGTGAGATTAGTCCACTGTGAAACTTTTAGC
* * ** *
5659 TCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTGAAGTTTTGAATCGTCTTCG
66 TAATTTGGAACACTTGTAATTTTGGGCCTAACGGGGACCATTAGTGAAGTTTTGAATCGTCTTCG
*
5724 ATCTGGC-AAACCCCGATGC-TTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGA
131 AT-TGGCTAAACCCCAATGCTTTTTCTTTCCATTGTTTAT-GCCTAACTATAATCATTTTGGTGA
5787 GATTAGTCCA
194 GATTAGTCCA
5797 CTGTGAAGTT
Statistics
Matches: 182, Mismatches: 18, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
204 19 0.10
205 126 0.69
206 37 0.20
ACGTcount: A:0.22, C:0.18, G:0.19, T:0.41
Consensus pattern (206 bp):
TTTCCAGTGTTTATGGCCTAACTATAATCATTATGGTGAGATTAGTCCACTGTGAAACTTTTAGC
TAATTTGGAACACTTGTAATTTTGGGCCTAACGGGGACCATTAGTGAAGTTTTGAATCGTCTTCG
ATTGGCTAAACCCCAATGCTTTTTCTTTCCATTGTTTATGCCTAACTATAATCATTTTGGTGAGA
TTAGTCCATTG
Found at i:5874 original size:154 final size:154
Alignment explanation
Indices: 5595--6474 Score: 1336
Period size: 154 Copynumber: 5.7 Consensus size: 154
5585 TAGTCCATTG
* * * **
5595 TTTCCAGTGTTTATGGCCTAACTATAATCATTATGGT-TGATTAGTCCACTGTGAAACTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
**
5659 TCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAG-TGAAGTTTTGAATCGTCTTC
66 TCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTCCA-TTTTGAATCGTCTTC
* *
5723 GATCTGGCAAACCCCGATGCTTTTC
130 GATTTGGCAAACCCCAATGCTTTTC
5748 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* *
5813 TCATTTGGAACACTTTTTATTTTGGGCCTTTCGGGGCACATTAGTTCCATTTTGAATCGTCTTCG
66 TCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTCCATTTTGAATCGTCTTCG
5878 ATTTGGCAAACCCCAATGCTTTTC
131 ATTTGGCAAACCCCAATGCTTTTC
*
5902 TTTCCATTGTTTATGGCCTAACTATAATCCTTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* *
5967 TCATTTGCAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTACATTTTGAATCGTCTTCG
66 TCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTCCATTTTGAATCGTCTTCG
6032 ATTTGGCAAACCCCAATGCTTTTC
131 ATTTGGCAAACCCCAATGCTTTTC
* * * *
6056 TTTCCATTGTTTATGGCCTAAGTATAATCCTTTTGGTGAGATTAGTCCACTGTGATGTTTTTAGA
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* * * *
6121 TCATTTGGAACACTTGTT-TTTTGGGCCTTTCGGGGCACATTCA-TTCCGTGTTGAATCGCCTTC
66 TCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATT-AGTTCCATTTTGAATCGTCTTC
* *
6184 GAATTGGCAAACCCTAATGCTTTTC
130 GATTTGGCAAACCCCAATGCTTTTC
* * * * *
6209 TTTCAATTGTTTATGGCCAAACTAAAATCCTTTTGGTGAGATTAGTCCACTGGGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* * ** *
6274 TCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCAATTACTGACGTTTTGAATCGTCTTCG
66 TCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTCCATTTTGAATCGTCTTCG
* *
6339 ATTTGGCAAACCGCAATGCTTTTT
131 ATTTGGCAAACCCCAATGCTTTTC
* *
6363 TTTCTATTGTTTATGGCCTAACTATAATCATTTTGGTGAGGTTAGTCCACTGTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* * * *
6428 TCATTTGGAACACATGTTACTTTGGGCCTATCGGGGCCCGTTAGTTC
66 TCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTC
6475 TGTAAGTTTT
Statistics
Matches: 664, Mismatches: 58, Indels: 9
0.91 0.08 0.01
Matches are distributed among these distances:
153 173 0.26
154 489 0.74
155 2 0.00
ACGTcount: A:0.21, C:0.19, G:0.20, T:0.40
Consensus pattern (154 bp):
TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
TCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTCCATTTTGAATCGTCTTCG
ATTTGGCAAACCCCAATGCTTTTC
Found at i:6329 original size:307 final size:308
Alignment explanation
Indices: 5602--6474 Score: 1392
Period size: 307 Copynumber: 2.8 Consensus size: 308
5592 TTGTTTCCAG
* * * **
5602 TGTTTATGGCCTAACTATAATCATTATGGT-TGATTAGTCCACTGTGAAACTTTTAGCTCATTTG
1 TGTTTATGGCCTAACTATAATCCTTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTG
* *
5666 GAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTGAAGTTTTGAATCGTCTTCGATCTGGC
66 GAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGC
*
5731 AAACCCCGATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCC
131 AAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCC
*
5796 ACTGTGAAGTTTTTAGCTCATTTGGAACACTTTTTATTTTGGGCCTTTCGGGGCACATTAGTTCC
196 ACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCACATTAGTTCC
* * * *
5861 ATTTTGAATCGTCTTCGATTTGGCAAACCCCAATGCTTTTCTTTCCAT
261 ATGTTGAATCGCCTTCGAATTGGCAAACCCCAATGCTTTTCTTTCAAT
5909 TGTTTATGGCCTAACTATAATCCTTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTG
1 TGTTTATGGCCTAACTATAATCCTTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTG
* * *
5974 CAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTACATTTTGAATCGTCTTCGATTTGGC
66 GAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGC
* *
6039 AAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAAGTATAATCCTTTTGGTGAGATTAGTCC
131 AAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCC
* *
6104 ACTGTGATGTTTTTAGATCATTTGGAACACTTGTT-TTTTGGGCCTTTCGGGGCACATTCA-TTC
196 ACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCACATT-AGTTC
* *
6167 CGTGTTGAATCGCCTTCGAATTGGCAAACCCTAATGCTTTTCTTTCAAT
260 CATGTTGAATCGCCTTCGAATTGGCAAACCCCAATGCTTTTCTTTCAAT
* * *
6216 TGTTTATGGCCAAACTAAAATCCTTTTGGTGAGATTAGTCCACTGGGAAGTTTTTAGCTCATTTG
1 TGTTTATGGCCTAACTATAATCCTTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTG
* *
6281 GAACACTTGTTATTTTGGGCCTTTCGGGGCCAATTACTGACGTTTTGAATCGTCTTCGATTTGGC
66 GAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGC
* * * *
6346 AAACCGCAATGCTTTTTTTTCTATTGTTTATGGCCTAACTATAATCATTTTGGTGAGGTTAGTCC
131 AAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCC
* * * * *
6411 ACTGTGAAGTTTTTAGCTCATTTGGAACACATGTTACTTTGGGCCTATCGGGGCCCGTTAGTTC
196 ACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCACATTAGTTC
6475 TGTAAGTTTT
Statistics
Matches: 519, Mismatches: 43, Indels: 7
0.91 0.08 0.01
Matches are distributed among these distances:
307 311 0.60
308 208 0.40
ACGTcount: A:0.21, C:0.19, G:0.20, T:0.40
Consensus pattern (308 bp):
TGTTTATGGCCTAACTATAATCCTTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTG
GAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGC
AAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCC
ACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCACATTAGTTCC
ATGTTGAATCGCCTTCGAATTGGCAAACCCCAATGCTTTTCTTTCAAT
Found at i:6482 original size:61 final size:62
Alignment explanation
Indices: 6412--6527 Score: 180
Period size: 61 Copynumber: 1.9 Consensus size: 62
6402 GGTTAGTCCA
6412 CTGTGAAGTTTTTAGCTCATTTGGAACACATGTTACTTTGGGCCTATCGGGGCCCGTTAGTT
1 CTGTGAAGTTTTTAGCTCATTTGGAACACATGTTACTTTGGGCCTATCGGGGCCCGTTAGTT
* * * * *
6474 CTGT-AAGTTTTTCGCTCTTTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCC
1 CTGTGAAGTTTTTAGCTCATTTGGAACACATGTTACTTTGGGCCTATCGGGGCCC
6528 ATAGTCACGT
Statistics
Matches: 49, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
61 45 0.92
62 4 0.08
ACGTcount: A:0.15, C:0.21, G:0.25, T:0.40
Consensus pattern (62 bp):
CTGTGAAGTTTTTAGCTCATTTGGAACACATGTTACTTTGGGCCTATCGGGGCCCGTTAGTT
Found at i:6633 original size:214 final size:215
Alignment explanation
Indices: 6263--6686 Score: 697
Period size: 214 Copynumber: 2.0 Consensus size: 215
6253 GTCCACTGGG
*
6263 AAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCAATTACTGACGTTTTG
1 AAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCAATTACTCACGTTTTG
* * *
6328 AATCGTCTTCGATTTGGCAAACCGCAATGCTTTTTTTTCTATTGTTTATGGCCTAACTATAATCA
66 AATCCTCTTCGATTTGGCAAACCGCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCA
* * *
6393 TTTTGGTGAGGTTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACATGTTACTTTGGGCCTA
131 TTTTGGTGAGATTAGTCAACTGTGAAGGTTTTAGCTCATTTGGAACACATGTTACTTTGGGCCTA
*
6458 TCGGGGCCCGTTAGTTCTGT
196 TCGGGGCCCATTAGTTCTGT
* * * *
6478 AAGTTTTTCGCTCTTTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCA-TAGTCACGTTTTG
1 AAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCAATTACTCACGTTTTG
*
6542 AATCCTCTTCGATTTGGCAAACCGCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATTA
66 AATCCTCTTCGATTTGGCAAACCGCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCA
* *
6607 TTTTGGTGAGATTAGTCAACTGTGAAGGTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTA
131 TTTTGGTGAGATTAGTCAACTGTGAAGGTTTTAGCTCATTTGGAACACATGTTACTTTGGGCCTA
*
6672 TTGGGGCCCATTAGT
196 TCGGGGCCCATTAGT
6687 GACGTTTTGA
Statistics
Matches: 193, Mismatches: 16, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
214 145 0.75
215 48 0.25
ACGTcount: A:0.20, C:0.18, G:0.21, T:0.41
Consensus pattern (215 bp):
AAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCAATTACTCACGTTTTG
AATCCTCTTCGATTTGGCAAACCGCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCA
TTTTGGTGAGATTAGTCAACTGTGAAGGTTTTAGCTCATTTGGAACACATGTTACTTTGGGCCTA
TCGGGGCCCATTAGTTCTGT
Found at i:7126 original size:309 final size:308
Alignment explanation
Indices: 6474--8574 Score: 3108
Period size: 309 Copynumber: 6.8 Consensus size: 308
6464 CCCGTTAGTT
* * *
6474 CTGT-AAGTTTTTCGCTCTTTTGGAACACTTGTTATTTTGGGCCT-TTCGGGGCCCA-TAGTCAC
1 CTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATT-GGGGCCCATTAGTGAC
* *
6536 GTTTTGAATCCTCTTCGATTTGGCAAACCGCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTA
65 GTTTTGAATCGTCTTCGATTTGGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTA
* * *
6601 TAATTATTTTGGTGAGATTAGTCAACTGTGAAGGTTTTAGCTCATTTGGAACACTTGTTATTTTG
130 TAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTG
* *
6666 GGCCTATT-GGGGCCCATTAGTGACGTTTTGAATCCTCTTCGATTTGGCAAACCTCAATGATTTT
195 GGCCT-TTCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATG-CTTT
* * ** *
6730 TTTTTCCATTCTTTATTACCTAACTATAATCATTTTGGTGAGATTAGTCAA
258 TCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCA
*
6781 CTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATTGGCGCCCATTAGTGACG
1 CTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATTGGGGCCCATTAGTGACG
* * *
6846 TTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTAC-GTGTTTATGGCCTAACTAT
66 TTTTGAATCGTCTTCGATTTGGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTAT
*
6910 AATCATTTGGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGG
131 AATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGG
* * ** *
6975 GCATTTCGGGGGCCCAATTCGTTCCGTTTTGAATCGCCTTCGATTTGGCAAACCTCAATAG-TTT
196 GCCTTTC-GGGGCCC-ATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAAT-GCTTT
* * * *
7039 TCTTTCAATTGTTTATGGCCTAACCATAATCCTTTTGGTGAGATTAGTCAA
258 TCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCA
* * *
7090 CTGGGAACG-TTTTAGCTAATTTGGAAAACTTGTTATTTTGGGCCTATTGGGGCCCATTAGTGAC
1 CTGTGAA-GTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATTGGGGCCCATTAGTGAC
* * *
7154 GTTTTGAATCCTCTTCGATTTGGCAAACCACAATGCTTTTCTTTCCATTGTTTATGGCCTAACAA
65 GTTTTGAATCGTCTTCGATTTGGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTA
*
7219 TAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTA
130 TAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTG
* * *
7284 GGTCTATAGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTT
195 GGCCTTTCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGC-TTTT
* **
7349 TTTTCCATTGTTTATTCCCTAACTATAATCATTTTGGTGAGATTAGTCCA
259 CTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCA
* * * **
7399 CTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTACTTTGGGCCTATCGGGGCCCGTTAGTTCCG
1 CTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATTGGGGCCCATTAGTGACG
*
7464 TTTTGAATCGTCTTCGATTTGGCAAACCCCAATGCTTTTCATTCCATTGTTTATGGCCTAACTAT
66 TTTTGAATCGTCTTCGATTTGGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTAT
* * *
7529 AATCCTTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGCAACACTTGTTATTTTGA
131 AATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGG
**
7594 GCCTTTCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACAGCAATGCTTTTCT
196 GCCTTTCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCT
*
7659 TTCCATTGTTTATGGCCTAACTATAATCATTTTGGAGAGATTAGTCCA
261 TTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCA
* * *
7707 CTGTGAAGTTTTTAGGTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCGTTAGTGACG
1 CTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATTGGGGCCCATTAGTGACG
*
7772 TTTTGAATTGTCTTCGATTTGGCAAACCCCAATGCTTTTCTTTCCATTGTTT-TGGCCTAACTAT
66 TTTTGAATCGTCTTCGATTTGGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTAT
* * *
7836 AATCCTTTTGGTGAGATTAGCCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTACTTTGG
131 AATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGG
* ** * ** *
7901 GCATACCGGGGCCCGTTAGTTCCG-TTTGTAATCGTCTTCGATTTGGCAAACCCCAATGCTTTTC
196 GCCTTTCGGGGCCCATTAGTGACGTTTTG-AATCGTCTTCGATTTGGCAAACCTCAATGCTTTTC
* *
7965 TTTCCATT-TTTATGTCCTAACTATAATCCTTTTGGTGAGATTAGTCCA
260 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCA
* **
8013 CTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTACTTTGGGCCTACCGGGGCCC-TTAGTGACG
1 CTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATTGGGGCCCATTAGTGACG
*
8077 TTTTGAATCGTCTTCGATTTGGCAAACAGCCAAATGCTTTTC-TTCCATTGTTTATGGCCTAACT
66 TTTTGAATCGTCTTCGATTTGGCAAAC--CCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACT
* * *
8141 ATAATCCTTTTGGTGAGATTAGTCCGCTGTGAAGTTTCTAGCTCATTTGGAACACTTG-TATTTT
129 ATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTT
*
8205 GGGCCTTTCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCCCAATGCTTTT
194 GGGCCTTTCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTT
*
8270 CTTTCCATTGTTTATGGCCTAACTATAATCCTTTTGGTGAGATTAGT-CA
259 CTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCA
* * * *
8319 CTGTGAAGTTTTTAGCTCATTTGCAACACTTGTTATTTTGGGCAT-TTCGAGGCCCATTACTGAC
1 CTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATT-GGGGCCCATTAGTGAC
* *
8383 GTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTT-TTTCCATTGTTTATTGCCTAACTA
65 GTTTTGAATCGTCTTCGATTTGGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTA
*
8447 TAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGATCATTTGGAACACTTGTT-TTTTG
130 TAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTG
* ** * * *
8511 GGCCTTT-GGGGCACATTCA-TTCCGTGTTGAATCGCCTTCGAATTGGCAAACC-CTAATGCTTT
195 GGCCTTTCGGGGCCCATT-AGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTC-AATGCTTT
8573 TC
258 TC
Statistics
Matches: 1637, Mismatches: 133, Indels: 51
0.90 0.07 0.03
Matches are distributed among these distances:
303 1 0.00
304 47 0.03
305 133 0.08
306 223 0.14
307 291 0.18
308 328 0.20
309 491 0.30
310 122 0.07
311 1 0.00
ACGTcount: A:0.21, C:0.19, G:0.20, T:0.40
Consensus pattern (308 bp):
CTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATTGGGGCCCATTAGTGACG
TTTTGAATCGTCTTCGATTTGGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTAT
AATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGG
GCCTTTCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCT
TTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCA
Found at i:7949 original size:153 final size:154
Alignment explanation
Indices: 6474--8574 Score: 3118
Period size: 154 Copynumber: 13.7 Consensus size: 154
6464 CCCGTTAGTT
* * * *
6474 CTGT-AAGTTTTTCGCTCTTTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCA-TAGTCACG
1 CTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACG
* *
6537 TTTTGAATCCTCTTCGATTTGGCAAACCGCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTAT
66 TTTTGAATCGTCTTCGATTTGGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTAT
* *
6602 AATTATTTTGGTGAGATTAGTCAA
131 AATCATTTTGGTGAGATTAGTCCA
* *
6626 CTGTGAAGGTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATTGGGGCCCATTAGTGACG
1 CTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACG
* * * * * **
6691 TTTTGAATCCTCTTCGATTTGGCAAACCTCAATGATTTTTTTTTCCATTCTTTATTACCTAACTA
66 TTTTGAATCGTCTTCGATTTGGCAAACCCCAATG-CTTTTCTTTCCATTGTTTATGGCCTAACTA
*
6756 TAATCATTTTGGTGAGATTAGTCAA
130 TAATCATTTTGGTGAGATTAGTCCA
* *
6781 CTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATTGGCGCCCATTAGTGACG
1 CTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACG
* * *
6846 TTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTAC-GTGTTTATGGCCTAACTAT
66 TTTTGAATCGTCTTCGATTTGGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTAT
*
6910 AATCATTTGGGTGAGATTAGTCCA
131 AATCATTTTGGTGAGATTAGTCCA
* * * **
6934 CTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCATTTCGGGGGCCCAATTCGTTC
1 CTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATC-GGGGCCC-ATTAGTGA
* * *
6999 CGTTTTGAATCGCCTTCGATTTGGCAAACCTCAATAG-TTTTCTTTCAATTGTTTATGGCCTAAC
64 CGTTTTGAATCGTCTTCGATTTGGCAAACCCCAAT-GCTTTTCTTTCCATTGTTTATGGCCTAAC
* * *
7063 CATAATCCTTTTGGTGAGATTAGTCAA
128 TATAATCATTTTGGTGAGATTAGTCCA
* * * *
7090 CTGGGAACG-TTTTAGCTAATTTGGAAAACTTGTTATTTTGGGCCTATTGGGGCCCATTAGTGAC
1 CTGTGAA-GTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGAC
* * *
7154 GTTTTGAATCCTCTTCGATTTGGCAAACCACAATGCTTTTCTTTCCATTGTTTATGGCCTAACAA
65 GTTTTGAATCGTCTTCGATTTGGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTA
7219 TAATCATTTTGGTGAGATTAGTCCA
130 TAATCATTTTGGTGAGATTAGTCCA
* * *
7244 CTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTAGGTCTATAGGGGCCCATTAGTGACG
1 CTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACG
* * **
7309 TTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTTTTTTCCATTGTTTATTCCCTAACTA
66 TTTTGAATCGTCTTCGATTTGGCAAACCCCAATGC-TTTTCTTTCCATTGTTTATGGCCTAACTA
7374 TAATCATTTTGGTGAGATTAGTCCA
130 TAATCATTTTGGTGAGATTAGTCCA
* * **
7399 CTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTACTTTGGGCCTATCGGGGCCCGTTAGTTCCG
1 CTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACG
*
7464 TTTTGAATCGTCTTCGATTTGGCAAACCCCAATGCTTTTCATTCCATTGTTTATGGCCTAACTAT
66 TTTTGAATCGTCTTCGATTTGGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTAT
*
7529 AATCCTTTTGGTGAGATTAGTCCA
131 AATCATTTTGGTGAGATTAGTCCA
* * *
7553 CTGTGAAGTTTTTAGCTCATTTGCAACACTTGTTATTTTGAGCCTTTCGGGGCCCATTAGTGACG
1 CTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACG
**
7618 TTTTGAATCGTCTTCGATTTGGCAAACAGCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTAT
66 TTTTGAATCGTCTTCGATTTGGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTAT
*
7683 AATCATTTTGGAGAGATTAGTCCA
131 AATCATTTTGGTGAGATTAGTCCA
* *
7707 CTGTGAAGTTTTTAGGTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCGTTAGTGACG
1 CTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACG
*
7772 TTTTGAATTGTCTTCGATTTGGCAAACCCCAATGCTTTTCTTTCCATTGTTT-TGGCCTAACTAT
66 TTTTGAATCGTCTTCGATTTGGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTAT
* *
7836 AATCCTTTTGGTGAGATTAGCCCA
131 AATCATTTTGGTGAGATTAGTCCA
* * * * **
7860 CTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTACTTTGGGCATACCGGGGCCCGTTAGTTCCG
1 CTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACG
*
7925 -TTTGTAATCGTCTTCGATTTGGCAAACCCCAATGCTTTTCTTTCCATT-TTTATGTCCTAACTA
66 TTTTG-AATCGTCTTCGATTTGGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTA
*
7988 TAATCCTTTTGGTGAGATTAGTCCA
130 TAATCATTTTGGTGAGATTAGTCCA
* *
8013 CTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTACTTTGGGCCTACCGGGGCCC-TTAGTGACG
1 CTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACG
*
8077 TTTTGAATCGTCTTCGATTTGGCAAACAGCCAAATGCTTTTC-TTCCATTGTTTATGGCCTAACT
66 TTTTGAATCGTCTTCGATTTGGCAAAC--CCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACT
* *
8141 ATAATCCTTTTGGTGAGATTAGTCCG
129 ATAATCATTTTGGTGAGATTAGTCCA
* *
8167 CTGTGAAGTTTCTAGCTCATTTGGAACACTTG-TATTTTGGGCCTTTCGGGGCCCATTAGTGACG
1 CTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACG
8231 TTTTGAATCGTCTTCGATTTGGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTAT
66 TTTTGAATCGTCTTCGATTTGGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTAT
*
8296 AATCCTTTTGGTGAGATTAGT-CA
131 AATCATTTTGGTGAGATTAGTCCA
* * * * *
8319 CTGTGAAGTTTTTAGCTCATTTGCAACACTTGTTATTTTGGGCATTTCGAGGCCCATTACTGACG
1 CTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACG
* *
8384 TTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTT-TTTCCATTGTTTATTGCCTAACTAT
66 TTTTGAATCGTCTTCGATTTGGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTAT
8448 AATCATTTTGGTGAGATTAGTCCA
131 AATCATTTTGGTGAGATTAGTCCA
* * * **
8472 CTGTGAAGTTTTTAGATCATTTGGAACACTTGTT-TTTTGGGCCT-TTGGGGCACATTCA-TTCC
1 CTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATT-AGTGAC
* * * *
8534 GTGTTGAATCGCCTTCGAATTGGCAAACCCTAATGCTTTTC
65 GTTTTGAATCGTCTTCGATTTGGCAAACCCCAATGCTTTTC
Statistics
Matches: 1780, Mismatches: 146, Indels: 46
0.90 0.07 0.02
Matches are distributed among these distances:
151 46 0.03
152 137 0.08
153 528 0.30
154 648 0.36
155 341 0.19
156 79 0.04
157 1 0.00
ACGTcount: A:0.21, C:0.19, G:0.20, T:0.40
Consensus pattern (154 bp):
CTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACG
TTTTGAATCGTCTTCGATTTGGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTAT
AATCATTTTGGTGAGATTAGTCCA
Done.