Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011921.1 Corchorus olitorius cultivar O-4 contig11954, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12006

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1036
154
6.8
154
90
1
1557
21
19
19
40
1.92
2--1036
307
3.4
306
91
2
1571
21
19
19
40
1.92
914--1153
123
2.0
123
90
1
383
23
16
17
42
1.88
762--1313
277
2.0
276
90
1
863
22
18
19
40
1.91
1037--1774
154
4.8
154
90
1
1156
20
18
19
40
1.91
1037--1774
307
2.4
308
90
0
1174
20
18
19
40
1.91
1658--1899
125
2.0
123
95
1
439
21
17
18
41
1.90
1775--2975
154
7.8
154
91
1
1829
20
19
19
40
1.92
2860--3098
123
1.9
123
97
0
451
21
17
18
41
1.90
2976--3697
154
4.8
154
88
5
1107
20
18
19
40
1.91
3424--3970
277
2.0
277
90
1
873
21
20
17
40
1.92
3584--3820
123
1.9
123
93
1
404
22
19
15
41
1.89
3701--4280
154
3.8
154
87
3
853
21
20
18
40
1.92
607--4128
431
8.0
431
78
12
2528
20
19
19
40
1.92
5646--5692
26
1.9
24
87
12
69
40
4
27
27
1.75
11537--11574
16
2.3
17
90
4
60
10
13
7
68
1.39
11537--11581
17
2.7
16
82
6
54
11
11
8
68
1.39

Tables:   1

The End!