Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011935.1 Corchorus olitorius cultivar O-4 contig11968, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56060

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
442--499
10
6.0
10
75
11
50
48
12
1
37
1.51
1785--1962
96
1.9
94
88
2
266
51
17
19
11
1.75
1785--1962
47
3.7
47
92
1
266
51
17
19
11
1.75
2328--2377
25
2.0
25
96
0
91
32
18
12
38
1.87
2363--2876
39
13.2
39
81
4
439
38
14
18
27
1.90
2959--2988
11
2.7
11
94
0
51
0
26
0
73
0.84
3898--3931
18
2.0
17
88
11
52
11
11
11
64
1.50
8693--8869
96
1.9
93
90
3
282
51
18
19
10
1.74
8693--8869
47
3.7
47
93
2
275
51
18
19
10
1.74
16927--16961
18
1.9
18
94
0
61
65
14
0
20
1.26
20849--20882
12
2.8
12
90
0
59
41
11
14
32
1.82
21695--21736
11
3.8
11
80
0
57
42
0
2
54
1.13
21699--21741
22
2.0
22
90
0
68
46
0
2
51
1.13
21696--21743
11
4.4
11
78
0
51
45
0
2
52
1.12
25780--25830
21
2.4
21
90
0
75
45
21
33
0
1.52
29527--29557
2
15.5
2
100
0
62
48
0
0
51
1.00
34133--34412
39
7.2
39
91
3
447
31
17
16
34
1.92
34090--34446
78
4.7
72
75
17
276
29
18
15
35
1.93
43549--43592
21
2.1
21
87
8
63
25
2
9
63
1.35
44870--44899
16
1.9
16
93
6
53
36
3
13
46
1.60
49461--49495
18
1.9
18
94
0
61
65
14
0
20
1.26
49520--49689
35
4.9
33
76
9
142
30
15
16
37
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51509--51558
21
2.4
21
90
6
75
28
18
26
28
1.98

Tables:   1

The End!