Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011936.1 Corchorus olitorius cultivar O-4 contig11969, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31308

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9--2969
154
19.3
154
88
2
4175
41
17
19
21
1.90
9--2969
307
9.6
308
88
2
4255
41
17
19
21
1.90
1--2969
461
6.4
462
89
2
4263
41
17
19
21
1.90
2869--3069
100
2.0
101
87
4
291
43
20
14
21
1.87
2970--3593
154
4.1
154
90
1
982
42
17
19
20
1.89
2970--3593
307
2.0
308
91
0
1000
42
17
19
20
1.89
3172--4008
415
2.0
415
91
1
1349
42
16
19
20
1.89
3483--3701
108
2.0
108
92
0
366
45
15
18
21
1.85
3591--4237
153
4.2
154
90
2
1005
42
17
19
20
1.89
2152--4237
722
2.9
720
85
5
2899
42
17
19
20
1.90
3591--4238
307
2.1
307
90
1
1023
42
17
18
20
1.89
6098--6144
26
1.9
23
87
12
67
40
4
27
27
1.75
8714--8742
14
2.1
14
93
6
51
55
0
0
44
0.99
8714--8765
19
2.8
20
74
11
56
50
0
0
50
1.00
12335--12438
16
6.6
16
82
9
133
7
12
38
41
1.72
13363--13429
2
35.5
2
76
11
70
46
1
0
52
1.09
15081--15119
19
2.1
19
95
0
69
53
17
7
20
1.68
16476--16513
11
3.5
11
85
10
51
57
2
0
39
1.12
16709--16754
17
2.7
17
96
0
83
13
26
0
60
1.32
16848--16909
31
2.1
31
82
8
76
33
1
8
56
1.38
27267--27292
13
2.0
13
100
0
52
23
7
46
23
1.78
28898--28934
14
2.6
14
91
0
65
8
21
0
70
1.13

Tables:   1

The End!