Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011943.1 Corchorus olitorius cultivar O-4 contig11976, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37173

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2914--2961
6
8.2
6
79
4
53
75
16
6
2
1.11
2921--2957
17
2.2
17
90
0
56
72
16
8
2
1.19
4725--4775
17
3.1
16
88
8
75
37
21
19
21
1.95
6805--6854
23
2.3
23
82
6
59
30
14
4
52
1.59
6950--6991
20
2.2
19
87
12
59
38
2
9
50
1.48
8571--8610
21
1.9
21
89
0
62
25
7
12
55
1.63
8787--8826
20
2.0
20
85
0
53
40
12
2
45
1.56
10076--10840
201
3.8
201
89
0
1093
32
18
15
33
1.92
12197--12241
2
23.5
2
86
8
58
53
2
0
44
1.13
13602--14021
43
10.0
43
78
10
368
22
10
27
39
1.87
13616--14021
84
4.8
84
87
5
518
22
10
27
39
1.86
17151--17191
15
2.7
15
96
0
73
14
48
24
12
1.78
23940--23975
19
1.9
18
88
5
54
41
8
22
27
1.82
23927--23987
30
2.0
30
84
6
79
42
8
18
31
1.79
29398--29434
18
2.1
18
89
0
56
45
5
10
37
1.62
30279--30314
19
1.9
18
88
5
54
41
8
22
27
1.82
30267--30326
30
2.0
30
83
6
77
41
8
18
31
1.80

Tables:   1

The End!