Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011944.1 Corchorus olitorius cultivar O-4 contig11977, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45725

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6464--6569
16
6.6
16
79
8
126
6
14
41
37
1.72
6479--6569
32
2.8
32
96
0
164
6
15
41
36
1.73
6558--6606
23
2.1
23
92
0
80
4
20
46
28
1.68
6582--6616
17
2.1
17
94
0
61
5
20
45
28
1.73
8967--9239
146
1.9
146
99
0
537
23
25
26
23
2.00
9413--9860
223
2.0
223
96
0
824
21
24
25
28
1.99
13463--13699
43
5.6
42
85
4
334
21
10
25
41
1.86
13463--13703
84
2.9
84
95
1
430
21
10
26
41
1.86
16366--16404
19
1.9
22
85
15
57
0
7
17
74
1.05
18629--18705
28
2.7
28
82
6
84
35
10
23
31
1.88
20087--20111
2
12.5
2
100
0
50
48
0
0
52
1.00
26430--26458
15
1.9
15
100
0
58
20
13
6
58
1.58
27272--27298
13
2.1
13
100
0
54
25
14
37
22
1.93
28850--28942
27
3.4
27
65
19
75
18
17
19
45
1.86
28835--28942
55
2.0
55
92
0
180
20
16
20
42
1.89
37603--37667
22
3.0
22
95
0
112
35
10
13
40
1.80
37710--37848
65
2.1
66
82
4
165
38
10
18
33
1.84
37680--38324
22
29.5
22
68
12
197
36
9
19
34
1.84
37875--37929
21
2.6
21
88
2
74
32
12
14
40
1.84
39200--39556
179
2.0
179
99
0
705
36
24
11
27
1.89
40847--40927
36
2.3
34
85
4
99
4
34
40
19
1.73
41819--42139
22
14.8
21
72
11
150
35
10
15
38
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41956--42000
20
2.2
20
84
0
54
44
13
22
20
1.85
41974--42032
21
2.8
21
82
5
66
40
11
20
27
1.87
42908--42971
29
2.2
30
80
5
78
51
1
1
45
1.20
44314--44354
20
2.0
20
85
0
55
39
14
9
36
1.79
44273--44577
22
14.2
21
70
12
144
35
15
10
38
1.82

Tables:   1

The End!