Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011945.1 Corchorus olitorius cultivar O-4 contig11978, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 19391
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33


Found at i:7702 original size:19 final size:18

Alignment explanation


    Indices: 7678--7713  Score: 54
    Period size: 19  Copynumber: 1.9  Consensus size: 18

       7668 TGAAGATTTA

                               
       7678 TTGAAGACAATTTGAAGAT
          1 TTGAAGACAA-TTGAAGAT

                    *        
       7697 TTGAAGACCATTGAAGA
          1 TTGAAGACAATTGAAGA

       7714 ATAATCTCAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    7  0.44
  19    9  0.56

ACGTcount: A:0.42, C:0.08, G:0.22, T:0.28


Consensus pattern (18 bp):   
TTGAAGACAATTGAAGAT

Found at i:12179 original size:7 final size:7

Alignment explanation


    Indices: 12167--12191  Score: 50
    Period size: 7  Copynumber: 3.6  Consensus size: 7

      12157 AAAGAAATTA

                   
      12167 AAAAGGG
          1 AAAAGGG

                   
      12174 AAAAGGG
          1 AAAAGGG

                   
      12181 AAAAGGG
          1 AAAAGGG

                
      12188 AAAA
          1 AAAA

      12192 ACTCAATTGT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   18  1.00

ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00


Consensus pattern (7 bp):   
AAAAGGG
Done.