Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011948.1 Corchorus olitorius cultivar O-4 contig11981, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10012
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32


Found at i:462 original size:22 final size:20

Alignment explanation


    Indices: 437--476  Score: 53
    Period size: 22  Copynumber: 1.9  Consensus size: 20

        427 AAATAAGTGA

                *                 
        437 AATACAAATATATAATATATAT
          1 AATAAAAAT-TAT-ATATATAT

                              
        459 AATAAAAATTATATATAT
          1 AATAAAAATTATATATAT

        477 TATCAGGTAG


Statistics
Matches: 17,  Mismatches: 1, Indels: 2
        0.85            0.05        0.10

Matches are distributed among these distances:
  20    6  0.35
  21    3  0.18
  22    8  0.47

ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38


Consensus pattern (20 bp):   
AATAAAAATTATATATATAT
Done.