genome.fa.s11953.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011953.1 Corchorus olitorius cultivar O-4 contig11986, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52360

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
655--699	22	2.0	22	100	0	90	13	46	26	13	1.80
3042--3079	18	2.0	20	85	10	53	10	13	15	60	1.59
4867--4892	13	2.0	13	100	0	52	15	0	30	53	1.42
5249--5299	19	2.7	19	77	14	61	47	0	1	50	1.12
6647--6752	51	2.1	50	82	8	126	21	21	13	43	1.86
9142--9246	48	2.2	48	93	5	178	16	4	32	46	1.67
9773--9863	44	2.1	44	93	4	157	25	12	17	45	1.83
13175--13254	40	2.0	39	95	2	142	47	15	6	31	1.70
16160--16204	17	2.7	16	83	10	63	26	20	11	42	1.85
17919--17952	2	17.0	2	93	0	59	50	2	0	47	1.16
22461--22650	32	5.9	32	87	0	227	28	20	20	30	1.97
23135--23257	33	3.7	33	82	10	153	15	30	11	42	1.82
23144--23271	33	3.9	33	80	10	118	15	30	12	41	1.84
28894--28952	27	2.2	27	84	6	84	35	35	3	25	1.73
31733--32734	39	25.9	39	77	9	905	40	18	27	13	1.88
31733--32734	79	13.0	77	77	8	817	40	18	27	13	1.88
32266--32734	119	4.0	118	80	6	465	38	18	28	13	1.90
34427--34584	50	3.2	49	92	4	255	42	11	3	43	1.56
34547--34623	39	2.0	40	89	7	122	48	14	5	32	1.66
34427--34608	100	1.8	100	84	4	251	43	12	2	40	1.57
34497--34670	89	2.0	88	81	6	208	45	13	4	37	1.62
39368--39459	10	10.1	10	65	22	51	40	1	1	57	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39385--39459	7	10.6	7	76	18	57	42	1	1	54	1.17
39382--39435	25	2.3	24	84	9	67	38	0	1	59	1.08
39782--39824	15	3.0	15	76	13	54	18	0	11	69	1.17
39784--39823	20	2.0	20	90	0	62	17	0	12	70	1.18
45398--46087	68	10.5	68	79	7	629	21	19	15	43	1.87
45396--46087	197	3.5	196	80	7	706	21	19	15	43	1.87
45805--45964	61	2.5	61	84	7	185	20	18	18	43	1.89
45474--46031	129	4.2	130	78	9	366	21	19	16	42	1.89
46005--46156	65	2.3	64	80	4	153	25	21	13	38	1.91
47738--48447	8	95.2	8	70	15	309	44	4	21	28	1.72
47738--48616	14	58.2	16	66	19	235	44	4	21	29	1.72
47742--48625	22	38.6	24	73	15	219	44	4	21	29	1.72
47853--48409	44	12.3	44	78	7	456	44	5	21	28	1.73
47729--48419	66	10.1	66	78	8	514	44	4	21	28	1.72
48014--48238	52	4.2	51	74	15	161	44	4	23	28	1.71
48338--48575	30	8.0	28	73	15	99	46	4	17	32	1.67
48404--48514	45	2.5	45	81	7	136	45	5	15	33	1.69
48176--48615	8	58.9	7	69	20	145	47	4	17	30	1.66
48339--48589	75	3.3	75	86	7	341	45	4	17	32	1.69
48479--48625	45	3.1	46	78	12	122	46	2	19	31	1.62

Tables:   1

The End!