Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011957.1 Corchorus olitorius cultivar O-4 contig11990, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30575

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6032--6102
15
4.7
15
91
0
106
21
25
32
21
1.98
6845--6982
22
6.5
22
74
6
97
37
14
13
34
1.85
6786--6896
55
2.0
56
84
5
145
41
11
11
35
1.78
6930--6982
20
2.7
20
78
0
61
43
15
11
30
1.81
7051--7096
22
2.1
22
84
8
58
36
15
8
39
1.78
7064--7165
22
4.5
21
70
13
69
32
17
7
42
1.78
8288--8729
47
9.4
47
94
1
769
29
21
4
45
1.70
8022--8729
94
7.2
94
90
3
887
28
20
4
46
1.71
8022--8729
141
4.8
142
88
6
852
28
20
4
46
1.71
8699--8757
28
2.1
28
96
0
109
25
25
0
49
1.51
8652--8804
75
2.0
75
97
0
288
28
22
2
47
1.65
8727--8849
47
2.6
47
94
1
221
27
22
4
45
1.70
8605--8849
122
2.0
121
92
2
411
28
21
4
45
1.70
8786--9035
55
4.5
55
87
3
340
24
20
6
49
1.71
8741--9039
55
5.5
53
84
7
261
25
21
5
47
1.72
9030--9129
36
2.6
37
83
12
123
25
17
13
45
1.84
13043--13079
19
2.0
19
89
5
58
64
2
0
32
1.07
13823--13871
11
4.7
11
78
16
52
28
22
14
34
1.93

Tables:   1

The End!