Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011958.1 Corchorus olitorius cultivar O-4 contig11991, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49373

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4145--4246
27
3.7
27
85
2
114
19
12
25
42
1.87
4372--4415
21
2.1
21
86
0
61
25
15
6
52
1.68
9379--9411
15
2.3
14
94
5
57
0
6
24
69
1.10
20842--20876
17
2.1
17
94
0
61
0
0
20
80
0.72
20843--20880
17
2.2
18
90
4
60
0
0
21
78
0.74
21170--21217
24
2.0
24
100
0
96
54
12
12
20
1.70
21178--21240
24
2.8
23
81
13
69
60
4
15
19
1.53
21650--21886
40
5.9
40
84
3
282
39
9
18
32
1.84
21995--22404
145
2.9
144
88
3
587
35
14
19
30
1.92
43666--43699
16
2.2
16
89
5
52
61
11
11
14
1.56
47610--47719
53
2.1
53
100
0
220
34
21
20
22
1.97

Tables:   1

The End!