Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011960.1 Corchorus olitorius cultivar O-4 contig11993, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34898

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
950--1092
51
2.9
47
80
14
173
26
16
5
51
1.66
5957--5989
17
2.1
16
88
11
50
6
24
0
69
1.10
6393--6448
28
2.0
28
92
0
94
30
1
48
19
1.59
7020--7060
19
2.1
20
86
4
57
21
0
7
70
1.11
10543--10605
25
2.5
25
100
0
126
39
3
0
57
1.15
10543--10622
25
3.2
24
91
7
99
42
3
0
53
1.18
12197--12233
2
18.5
2
94
0
65
45
0
2
51
1.15
13805--13849
22
2.0
22
100
0
90
17
20
8
53
1.70
21664--21709
22
2.1
22
95
0
83
41
10
4
43
1.59
27575--27612
3
12.3
3
94
5
67
34
0
0
65
0.93
29337--29380
6
7.2
6
87
5
61
75
4
2
18
1.09
29337--29380
19
2.4
18
85
7
61
75
4
2
18
1.09
30155--30805
131
5.0
131
90
1
905
32
15
13
37
1.87
32792--32910
40
3.1
38
69
20
104
37
12
11
37
1.80
32751--32918
75
2.2
75
87
4
241
38
11
11
38
1.77
32777--32895
36
3.2
35
69
19
98
37
11
12
37
1.80
32785--32949
75
2.2
75
84
3
206
40
12
11
36
1.79

Tables:   1

The End!