Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011961.1 Corchorus olitorius cultivar O-4 contig11994, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41330

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2167--3160
422
2.3
421
83
6
1189
41
13
14
30
1.84
2955--3370
168
2.5
168
78
9
427
37
16
15
31
1.89
3696--3788
2
44.5
2
83
8
114
46
2
5
46
1.37
3699--3788
17
5.2
17
85
6
119
46
2
5
45
1.38
3697--3786
36
2.5
36
96
0
162
46
2
5
45
1.38
13709--13797
27
3.3
27
82
6
101
19
17
25
37
1.94
13722--13799
26
2.9
27
84
3
113
17
19
24
38
1.93
24159--24191
11
2.9
12
82
17
52
48
18
0
33
1.48
25639--25683
21
2.1
21
95
0
81
28
8
22
40
1.84
32377--32422
21
2.1
22
88
4
67
13
19
50
17
1.78
35434--35478
23
1.9
24
86
13
67
37
8
8
44
1.67

Tables:   1

The End!