Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011962.1 Corchorus olitorius cultivar O-4 contig11995, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38863

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
576--619
13
3.4
14
87
12
60
59
11
0
29
1.32
564--620
25
2.2
27
79
17
68
59
10
0
29
1.31
587--620
13
2.6
13
100
0
68
64
8
0
26
1.22
1984--2017
3
11.3
3
93
0
59
0
38
0
61
0.96
3538--3581
22
2.0
22
90
0
70
40
34
9
15
1.79
6090--6122
11
3.1
11
86
8
50
0
0
24
75
0.80
6724--6877
77
2.0
77
93
2
265
36
10
17
35
1.84
8990--9061
29
2.5
29
93
0
117
37
15
23
23
1.93
9759--9934
60
3.0
60
90
0
255
23
2
21
51
1.61
9905--9998
44
2.1
44
100
0
188
18
6
23
52
1.68
10094--10126
17
1.9
17
93
0
57
12
6
24
57
1.57
10623--10664
9
4.7
9
77
11
50
38
7
28
26
1.82
10605--10673
27
2.6
27
90
0
111
39
5
28
26
1.79
10755--10808
21
2.6
21
88
5
74
35
5
42
16
1.72
10819--10854
6
6.0
6
90
0
54
16
16
27
38
1.90
10819--10854
12
3.0
12
91
0
63
16
16
27
38
1.90
22108--22149
11
3.7
11
81
15
50
40
0
4
54
1.21
23137--23344
7
29.9
7
99
0
409
28
0
14
56
1.38
23498--23575
33
2.4
33
91
0
120
32
6
17
43
1.75
23703--23981
54
5.2
54
88
1
398
36
21
13
27
1.91
24088--24321
37
6.4
37
81
6
296
44
15
17
23
1.87
24088--24321
110
2.1
111
94
0
407
44
15
17
23
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24203--24346
74
2.0
73
92
1
243
43
14
16
25
1.86
25303--25345
20
2.2
20
87
4
61
0
18
2
79
0.85
25978--26015
14
2.7
14
88
11
60
36
10
7
44
1.68
31930--31992
3
21.3
3
93
3
110
31
0
1
66
1.01
34218--34250
17
2.0
17
88
5
50
69
0
0
30
0.88
35606--35749
67
2.3
63
88
9
206
34
16
18
30
1.93
35606--35749
33
4.6
31
80
13
154
34
16
18
30
1.93

Tables:   1

The End!