genome.fa.s11964.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011964.1 Corchorus olitorius cultivar O-4 contig11997, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37491

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2844--2879	16	2.3	16	95	4	65	44	11	27	16	1.82
2897--2950	23	2.4	23	84	6	76	38	20	22	18	1.93
2897--2964	23	3.0	21	79	12	73	42	19	23	14	1.88
5473--5526	19	2.6	21	77	19	60	38	3	18	38	1.69
8182--8420	119	2.0	119	96	0	442	18	19	19	42	1.89
12005--12152	54	2.8	53	80	8	167	48	8	22	20	1.76
12128--12309	48	3.9	47	93	4	291	45	4	20	29	1.71
13938--14086	53	2.8	54	80	5	178	49	9	20	20	1.76
14061--14536	47	9.5	47	82	9	502	46	5	19	27	1.71
13991--14536	148	3.6	147	83	8	618	46	6	20	27	1.74
14061--14536	195	2.4	199	90	5	726	46	5	19	27	1.71
13953--14607	94	6.4	108	80	8	506	46	6	20	26	1.74
14332--14607	54	5.1	54	83	3	338	46	5	18	28	1.72
17415--17514	27	3.7	27	87	1	119	18	17	27	38	1.92
20005--20107	41	2.5	41	96	0	188	28	8	14	48	1.73
20005--20123	41	2.9	41	90	5	179	27	10	15	46	1.79
20000--20132	41	3.2	41	83	8	164	27	9	14	48	1.74
20767--20816	8	6.0	8	83	4	55	78	0	18	4	0.91
20767--20816	17	3.0	17	80	11	59	78	0	18	4	0.91
20768--20824	17	3.4	17	76	13	55	75	1	17	5	1.07
25518--25618	7	13.7	7	71	22	57	79	7	1	10	1.02
25576--25628	12	4.2	13	81	13	56	86	5	1	5	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25544--25617	38	1.9	38	83	5	96	81	8	1	9	0.94
27262--27550	69	4.2	69	81	2	321	26	26	16	29	1.97
27645--27960	169	1.9	169	88	2	483	29	20	16	33	1.95
28057--28097	20	2.0	20	85	0	55	24	21	21	31	1.98
28171--28293	30	4.1	30	87	1	174	20	14	15	49	1.79
28249--28336	32	2.8	30	80	14	83	23	15	17	43	1.87
28806--28904	27	3.7	27	88	0	135	18	18	26	37	1.93
31334--31445	41	2.7	41	87	5	163	25	13	14	46	1.81

Tables:   1

The End!