Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011966.1 Corchorus olitorius cultivar O-4 contig11999, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18968

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
857--955
30
3.1
30
69
18
92
37
12
21
29
1.89
834--955
65
1.9
65
98
0
235
36
12
20
30
1.89
4819--4890
31
2.3
31
76
4
83
58
11
4
26
1.50
5029--5058
15
2.0
15
93
0
51
43
0
3
53
1.17
6573--6679
41
2.6
42
75
10
112
36
1
18
42
1.61
7186--7239
21
2.7
21
82
5
67
20
11
22
46
1.82
7567--7605
18
2.3
17
86
8
53
7
23
0
69
1.14
7537--7597
32
1.9
31
83
3
77
6
18
3
72
1.21
10518--10727
104
2.0
105
98
0
404
55
30
2
11
1.51
10692--10777
21
4.0
21
89
3
127
56
29
1
12
1.43
10698--10753
11
5.3
11
74
8
62
53
32
0
14
1.41
10692--10777
43
2.0
42
88
2
127
56
29
1
12
1.43
10698--10773
11
7.1
11
70
16
61
53
30
1
14
1.49
14067--14151
42
2.0
42
95
0
152
21
14
30
34
1.93
14326--14363
18
2.1
18
95
0
67
28
10
26
34
1.90
14336--14415
34
2.3
36
81
14
98
17
12
25
45
1.83
15799--15824
1
26.0
1
100
0
52
0
0
0
100
0.00
16426--16453
14
2.0
14
100
0
56
14
28
14
42
1.84
16583--16720
45
3.0
43
76
16
143
10
23
21
44
1.84
16597--16700
51
2.1
50
85
5
138
12
25
22
40
1.88
16597--16827
47
4.9
47
75
8
229
12
25
21
40
1.88

Tables:   1

The End!