Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011967.1 Corchorus olitorius cultivar O-4 contig12000, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69697

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3783--3830
25
1.9
25
95
0
87
39
10
18
31
1.85
10142--10194
27
1.9
28
85
11
74
18
5
9
66
1.41
10574--10673
27
3.7
27
83
1
119
39
25
17
19
1.92
10749--10790
2
21.0
2
95
0
75
50
2
0
47
1.14
19577--19607
2
15.5
2
100
0
62
48
0
0
51
1.00
23857--25114
217
5.9
203
85
5
1259
36
19
7
36
1.80
24046--25114
217
4.9
217
88
2
1561
36
19
7
35
1.80
23857--25114
656
1.9
643
88
5
1877
36
19
7
36
1.80
27184--27364
39
4.7
39
87
1
247
24
33
16
25
1.95
30905--30961
28
2.0
28
86
0
78
56
5
19
19
1.61
30972--31036
33
2.0
33
81
6
78
46
10
10
32
1.73
31826--31886
32
1.9
32
83
6
79
57
13
18
11
1.65
32687--32742
26
2.2
25
87
6
78
30
14
7
48
1.70
35167--35204
16
2.4
16
82
13
51
5
7
34
52
1.53
40597--40622
11
2.4
11
100
0
52
7
15
7
69
1.35
45784--45849
26
2.5
25
83
11
71
71
1
18
9
1.20
46028--46110
39
2.1
40
86
2
114
37
12
10
39
1.78
47186--47341
54
2.9
54
88
1
224
28
18
23
30
1.98
47313--47514
35
5.7
35
88
1
278
29
10
20
39
1.86
50393--50423
10
3.1
10
95
0
53
12
0
6
80
0.89
50486--50523
2
19.0
2
100
0
76
50
0
0
50
1.00
55468--55492
13
1.9
13
100
0
50
16
12
16
56
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57241--57315
28
2.7
28
81
8
91
13
9
20
57
1.63
57227--57316
14
6.4
14
71
10
58
12
10
20
57
1.62
57354--57395
21
2.0
22
85
4
59
11
14
14
59
1.61
57238--57543
137
2.2
138
91
0
479
11
11
21
55
1.66
57389--57438
14
3.5
14
80
2
64
8
8
24
60
1.52
57378--57452
28
2.6
28
89
2
114
9
9
24
57
1.59
57378--57453
14
5.4
14
75
1
62
9
9
25
56
1.60
58789--58827
16
2.4
16
86
0
51
46
2
15
35
1.60
59235--59278
19
2.3
19
100
0
88
9
4
25
61
1.45

Tables:   1

The End!