Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011968.1 Corchorus olitorius cultivar O-4 contig12001, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63826

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7--73
2
33.5
2
93
0
116
2
49
0
47
1.16
3343--3383
21
2.0
21
90
0
64
34
7
24
34
1.83
8676--8791
39
3.0
40
87
8
168
28
14
6
50
1.69
13238--13267
5
6.0
5
100
0
60
80
0
0
20
0.72
14805--15008
108
1.9
105
84
6
268
31
7
21
39
1.81
15016--15219
22
9.7
21
69
17
86
36
9
16
37
1.81
15052--15135
21
4.1
21
72
13
59
32
9
17
40
1.82
15104--15219
44
2.7
44
76
6
119
38
10
14
36
1.81
15225--15277
22
2.4
22
87
0
79
33
5
18
41
1.74
15264--15307
23
1.9
23
86
9
63
31
13
13
40
1.84
15327--15383
22
2.6
23
78
13
66
40
8
10
40
1.71
15327--15422
22
4.5
22
74
10
65
44
10
8
36
1.69
16918--16955
15
2.4
16
91
4
60
73
10
5
10
1.23
18861--18978
20
5.8
20
75
16
102
36
13
11
38
1.80
18844--18980
40
3.3
40
90
6
195
37
13
10
37
1.80
18710--19133
22
19.7
21
71
14
158
39
10
14
35
1.80
18774--19267
22
22.9
21
70
14
226
37
10
15
36
1.83
18648--19315
66
10.2
65
72
12
334
37
11
15
35
1.83
18648--19310
44
15.2
43
76
8
409
37
11
14
36
1.82
19531--19569
14
2.5
16
84
16
55
61
0
0
38
0.96
28826--28861
13
2.8
13
82
0
54
47
0
0
52
1.00
29558--29813
22
11.7
21
69
13
108
37
8
19
35
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29493--29646
66
2.3
66
81
8
179
33
7
19
40
1.79
29826--29920
44
2.2
44
96
0
172
30
14
20
34
1.92
29938--29990
21
2.5
21
79
11
54
39
11
13
35
1.80
29953--30007
22
2.6
21
77
5
56
41
12
7
38
1.71
30043--30090
22
2.2
22
84
0
60
33
6
22
37
1.80
30041--30143
21
4.9
21
69
10
75
35
8
21
33
1.84
30152--30229
22
3.5
22
76
13
70
35
6
12
44
1.68
36085--36135
5
9.8
5
87
8
75
0
0
17
82
0.67
36088--36145
10
5.5
10
86
10
62
0
3
15
81
0.83
47215--47450
128
1.8
128
95
1
429
34
8
8
48
1.64
50542--50577
19
1.9
18
88
5
54
33
22
2
41
1.68
50542--50588
11
4.7
10
80
17
53
31
21
6
40
1.78
60412--60462
19
2.7
19
72
24
54
49
1
0
49
1.12
62348--62398
22
2.3
22
83
6
59
41
9
9
39
1.71

Tables:   1

The End!