Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011970.1 Corchorus olitorius cultivar O-4 contig12003, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11455

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2876--3034
41
4.0
40
72
11
103
32
5
23
38
1.77
4509--4543
18
1.9
18
94
0
61
51
11
8
28
1.67
4733--4807
35
2.1
35
97
0
141
41
18
17
22
1.90
5056--5117
3
20.7
3
100
0
124
66
0
0
33
0.92
6402--6659
112
2.3
113
93
2
430
22
21
22
33
1.97
7075--7163
25
3.4
25
70
8
79
22
17
30
29
1.97
7100--7142
14
3.1
14
82
0
59
18
13
32
34
1.90
7063--7300
53
4.5
53
74
5
228
24
18
27
29
1.98
7227--7274
25
1.9
25
91
0
78
27
20
29
22
1.99
7267--7309
14
3.1
14
96
0
77
20
13
30
34
1.92
7436--7517
42
2.0
42
87
0
119
23
19
30
26
1.98
7714--7858
78
1.9
77
91
4
238
26
20
20
33
1.97
7881--8020
51
2.7
50
83
6
147
25
23
15
35
1.94
8081--8168
31
2.8
32
84
1
115
26
25
17
31
1.97
8324--8489
72
2.3
72
92
0
278
23
25
22
27
2.00
8324--8490
36
4.6
36
85
0
226
23
25
22
28
1.99
9143--9353
48
4.5
48
95
1
356
41
18
17
22
1.90
10577--10621
13
3.5
13
79
11
56
31
4
31
33
1.78
10815--10845
14
2.2
14
100
0
62
38
22
6
32
1.80

Tables:   1

The End!