Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011971.1 Corchorus olitorius cultivar O-4 contig12004, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9937
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.30


Found at i:7338 original size:25 final size:25

Alignment explanation


    Indices: 7304--7353  Score: 91
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       7294 GATTGGTTTG

                             *       
       7304 TAGAGACCGAGCGAGAGTGCTCAAA
          1 TAGAGACCGAGCGAGAGAGCTCAAA

                                     
       7329 TAGAGACCGAGCGAGAGAGCTCAAA
          1 TAGAGACCGAGCGAGAGAGCTCAAA

       7354 ATTGTTTGGG


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  25   24  1.00

ACGTcount: A:0.38, C:0.20, G:0.32, T:0.10


Consensus pattern (25 bp):   
TAGAGACCGAGCGAGAGAGCTCAAA
Done.