Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011973.1 Corchorus olitorius cultivar O-4 contig12006, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45654

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--2701
154
17.5
154
94
0
4510
21
18
19
40
1.92
8709--8833
65
1.9
65
88
0
187
22
26
27
24
2.00
9550--9582
17
1.9
17
88
11
50
30
15
30
24
1.95
10366--10418
20
2.7
20
90
0
70
28
30
11
30
1.91
18885--18972
28
3.1
28
65
18
74
50
7
7
34
1.61
18876--18987
56
2.0
56
94
0
197
48
8
7
35
1.62
20055--20095
2
20.5
2
89
0
64
43
0
4
51
1.23
26372--26465
45
2.2
42
87
11
129
36
4
20
39
1.72
30567--31090
54
9.7
54
84
7
536
46
6
22
24
1.75
30792--30984
47
4.0
44
76
15
154
45
5
21
27
1.74
30734--31090
101
3.4
101
85
3
444
45
5
22
26
1.75
30619--31097
155
3.0
155
81
9
506
45
6
22
25
1.75
31021--31160
75
1.9
75
86
3
201
49
5
23
22
1.69
30967--31212
129
1.9
129
84
3
325
49
5
21
24
1.70
31096--31287
54
3.6
54
84
1
251
50
5
18
25
1.69
30939--31268
183
1.8
183
84
4
459
47
5
20
26
1.72
37903--37955
9
5.7
9
81
16
63
75
0
13
11
1.05
38321--38364
17
2.8
16
86
10
63
77
6
0
15
0.97
38357--38399
11
3.8
11
90
9
61
65
16
2
16
1.38
38356--38399
6
7.7
6
85
10
65
65
15
2
15
1.36
38356--38398
17
2.5
17
96
0
77
65
16
2
16
1.38
39017--39156
50
2.9
50
80
4
171
31
19
15
33
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39605--39773
91
1.9
90
91
0
266
28
22
13
35
1.92
39971--40266
69
4.3
69
87
3
393
27
28
15
27
1.96
39853--40080
119
1.9
119
93
0
393
28
28
14
28
1.95
39975--40239
137
1.9
137
87
1
388
26
29
15
28
1.96
41192--41238
21
2.2
21
88
0
67
23
17
17
42
1.88
41201--41248
21
2.3
20
79
10
51
20
14
20
43
1.87

Tables:   1

The End!