Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011975.1 Corchorus olitorius cultivar O-4 contig12008, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35420

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11380--11421
21
2.0
22
90
4
68
42
14
30
11
1.81
12710--12803
49
1.9
49
97
0
179
25
8
20
45
1.79
17686--17735
21
2.4
21
86
6
66
30
10
20
40
1.85
23588--23640
22
2.4
22
81
6
63
41
11
11
35
1.77
23588--23646
22
2.7
22
75
15
59
38
13
10
37
1.79
23663--23710
22
2.2
22
84
0
60
45
6
14
33
1.70
25740--26077
178
1.9
179
84
5
452
34
15
13
35
1.88
25737--26119
178
2.1
178
81
4
441
36
15
14
33
1.87
28654--28688
2
18.0
2
88
5
54
48
2
0
48
1.16
29231--29261
16
1.9
16
100
0
62
45
3
51
0
1.17
30381--30439
29
2.0
29
100
0
118
38
23
13
23
1.91
31431--31469
20
2.0
20
100
0
78
15
20
28
35
1.93
33046--33208
75
2.2
75
79
0
164
30
19
18
32
1.95

Tables:   1

The End!