Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011979.1 Corchorus olitorius cultivar O-4 contig12012, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11539

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6611--6655
21
2.1
21
88
8
65
84
0
15
0
0.62
6626--6668
21
2.0
22
86
4
61
76
2
18
2
1.00
6618--6649
6
5.5
6
92
7
57
84
0
15
0
0.63
6788--6953
87
1.9
87
86
0
233
36
12
24
27
1.90
7691--8195
37
13.6
38
76
5
442
23
16
14
46
1.83
7665--8194
74
7.1
74
87
3
733
23
16
14
46
1.83
7665--8194
149
3.6
148
86
4
730
23
16
14
46
1.83
7665--8194
223
2.4
222
90
2
837
23
16
14
46
1.83
8217--8259
18
2.4
19
76
11
54
25
13
6
53
1.65
8285--8952
54
12.3
54
88
3
900
27
14
21
36
1.93
9020--9097
33
2.4
33
91
0
120
43
17
6
32
1.75
9208--9254
23
2.0
23
95
0
85
40
17
2
40
1.61
9239--9323
21
4.0
21
79
0
98
52
22
1
23
1.54
9239--9294
7
8.0
7
95
0
85
57
23
0
19
1.41
9346--9371
7
3.7
7
100
0
52
57
15
11
15
1.65
9345--9379
14
2.5
14
85
0
52
54
14
8
22
1.67
10806--10847
7
5.9
7
86
5
57
64
2
0
33
1.07
11284--11363
29
2.7
29
88
3
106
28
18
12
40
1.87

Tables:   1

The End!