Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001198.1 Corchorus olitorius cultivar O-4 contig01198, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 745

Length: 1242
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38


Found at i:566 original size:35 final size:36

Alignment explanation


    Indices: 520--588  Score: 122
    Period size: 35  Copynumber: 1.9  Consensus size: 36

        510 GAGATTTTGG

                         *                      
        520 AGAAATATGATAATCAAAATTAC-AAAAATGTAATA
          1 AGAAATATGATAACCAAAATTACAAAAAATGTAATA

                                              
        555 AGAAATATGATAACCAAAATTACAAAAAATGTAA
          1 AGAAATATGATAACCAAAATTACAAAAAATGTAA

        589 GGTTATTGAA


Statistics
Matches: 32,  Mismatches: 1, Indels: 1
        0.94            0.03        0.03

Matches are distributed among these distances:
  35   22  0.69
  36   10  0.31

ACGTcount: A:0.61, C:0.07, G:0.09, T:0.23


Consensus pattern (36 bp):   
AGAAATATGATAACCAAAATTACAAAAAATGTAATA
Done.