Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011987.1 Corchorus olitorius cultivar O-4 contig12020, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49188

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4343--4371
14
2.1
14
100
0
58
34
34
13
17
1.89
8249--8278
15
2.0
15
93
0
51
50
0
0
50
1.00
9191--10645
652
2.2
651
80
6
1574
33
13
16
37
1.87
10143--11248
604
1.9
589
80
7
1292
33
13
16
36
1.88
10747--14525
653
5.7
634
74
14
2600
33
14
16
36
1.89
11903--14518
677
3.9
668
82
7
2737
33
14
16
35
1.89
10747--14536
321
11.5
321
68
16
1447
33
14
16
36
1.89
18742--18774
16
2.1
16
100
0
66
45
24
12
18
1.83
24925--24955
15
2.1
15
93
0
53
58
16
6
19
1.59
24983--25017
14
2.5
14
90
0
61
68
0
8
22
1.16
25921--25974
21
2.6
21
82
2
65
51
20
7
20
1.70
34776--34826
27
1.9
26
84
11
68
0
33
3
62
1.13

Tables:   1

The End!