Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011988.1 Corchorus olitorius cultivar O-4 contig12021, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13093

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
281--318
18
2.1
19
90
5
60
5
31
0
63
1.17
3355--3428
26
2.8
27
77
4
78
40
27
14
17
1.89
3669--4053
51
7.6
51
92
2
652
26
26
10
35
1.90
3669--4053
101
3.8
101
94
2
648
26
26
10
35
1.90
3669--4056
152
2.6
152
93
2
672
26
26
11
35
1.90
4257--5379
64
17.5
64
87
3
1551
25
22
15
36
1.94
4257--5379
320
3.5
320
92
1
1818
25
22
15
36
1.94
5349--5456
55
2.0
55
87
7
157
28
26
12
32
1.92
6107--6153
23
2.1
22
84
4
58
25
29
17
27
1.97
8332--8371
14
2.8
14
84
3
53
30
15
10
45
1.78
8335--8385
15
3.5
15
83
2
59
35
13
9
41
1.78
12508--12545
18
2.1
19
90
5
60
5
31
0
63
1.17

Tables:   1

The End!