Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011992.1 Corchorus olitorius cultivar O-4 contig12025, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 34591
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33


Found at i:5456 original size:13 final size:13

Alignment explanation


    Indices: 5438--5463  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       5428 CTTGGCATGA

                         
       5438 GTGATGATTTTTG
          1 GTGATGATTTTTG

                         
       5451 GTGATGATTTTTG
          1 GTGATGATTTTTG

       5464 TTGTTGAAAC


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.15, C:0.00, G:0.31, T:0.54


Consensus pattern (13 bp):   
GTGATGATTTTTG

Found at i:15008 original size:50 final size:50

Alignment explanation


    Indices: 14954--15053  Score: 137
    Period size: 50  Copynumber: 2.0  Consensus size: 50

      14944 TCGAGAATCG

                   *                       *          *       
      14954 GTTTTTATCACGTATTGGTGACATATTTATCGATAAACAAGCGATTCAAT
          1 GTTTTTACCACGTATTGGTGACATATTTATCAATAAACAAGCAATTCAAT

                      *         ***                           
      15004 GTTTTTACCATGTATTGGTGGTGTATTTATCAATAAACAAGCAATTCAAT
          1 GTTTTTACCACGTATTGGTGACATATTTATCAATAAACAAGCAATTCAAT

      15054 ACGTATCTTA


Statistics
Matches: 43,  Mismatches: 7, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  50   43  1.00

ACGTcount: A:0.32, C:0.13, G:0.16, T:0.39


Consensus pattern (50 bp):   
GTTTTTACCACGTATTGGTGACATATTTATCAATAAACAAGCAATTCAAT
Done.