Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011993.1 Corchorus olitorius cultivar O-4 contig12026, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57435

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2230--2269
15
2.7
15
88
0
62
65
12
7
15
1.47
5981--6038
26
2.3
26
81
3
73
20
13
3
62
1.46
6509--6542
2
17.0
2
100
0
68
50
0
0
50
1.00
15465--15613
75
2.0
75
97
0
280
33
26
8
32
1.85
32339--32369
15
2.1
15
93
0
53
70
6
9
12
1.31
38798--38850
25
2.2
24
83
9
65
39
18
5
35
1.75
39171--39201
15
2.1
15
93
0
53
70
6
9
12
1.31
39186--39231
24
1.9
24
86
8
67
58
10
13
17
1.62
41674--41713
3
13.3
3
100
0
80
0
0
65
35
0.93
42794--42827
17
2.0
17
88
0
50
58
0
5
35
1.22
44783--44839
30
1.9
30
89
3
89
28
5
10
56
1.55
52236--52269
2
17.5
2
93
6
61
50
0
0
50
1.00
52915--52975
30
2.0
30
90
6
97
26
24
3
45
1.68
54718--54758
16
2.6
16
96
0
73
26
14
4
53
1.61

Tables:   1

The End!