Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000120.1 Corchorus olitorius cultivar O-4 contig00120, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 979

Length: 1633
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.37


Found at i:1286 original size:21 final size:21

Alignment explanation


    Indices: 1239--1286  Score: 62
    Period size: 21  Copynumber: 2.3  Consensus size: 21

       1229 TAAAATCATA

                 *               
       1239 AAAAACTTTAATAAGCTTACT
          1 AAAAAGTTTAATAAGCTTACT

                                  
       1260 AAAAAGTTTAATAATGC-TACT
          1 AAAAAGTTTAATAA-GCTTACT

             *    
       1281 ATAAAG
          1 AAAAAG

       1287 CATATATCAA


Statistics
Matches: 24,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  21   22  0.92
  22    2  0.08

ACGTcount: A:0.50, C:0.10, G:0.08, T:0.31


Consensus pattern (21 bp):   
AAAAAGTTTAATAAGCTTACT
Done.