Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012001.1 Corchorus olitorius cultivar O-4 contig12034, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35905

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1781--1839
26
2.2
26
84
3
82
50
8
5
35
1.55
1788--1838
26
2.0
26
92
0
84
45
9
5
39
1.62
1907--1978
33
2.1
34
82
12
87
48
6
9
34
1.63
2290--2328
16
2.4
16
87
8
53
66
12
10
10
1.44
8329--8514
96
1.9
95
85
3
257
35
19
10
33
1.87
9092--9566
234
2.0
234
85
4
636
40
15
13
31
1.85
12795--12846
18
2.9
18
94
0
86
13
5
34
46
1.67
13416--13498
41
2.0
41
86
4
114
34
20
6
38
1.77
14166--14200
12
2.9
12
82
0
52
57
11
17
14
1.66
16562--17395
54
15.5
54
86
4
1092
50
7
17
25
1.72
16754--17323
26
21.3
26
60
12
96
49
7
16
26
1.71
17100--17351
28
9.3
27
61
16
83
50
7
18
24
1.71
19498--19637
38
3.7
38
76
7
149
23
35
18
22
1.96
19493--19634
76
1.9
76
88
5
216
24
34
19
21
1.96
30310--30367
29
2.0
30
86
3
82
24
13
22
39
1.90
30958--31012
21
2.6
21
94
0
92
41
20
36
1
1.63
31126--31188
21
3.0
21
92
0
99
20
15
39
23
1.91

Tables:   1

The End!