Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012004.1 Corchorus olitorius cultivar O-4 contig12037, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36197

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12509--12535
3
9.0
3
100
0
54
33
0
0
66
0.92
14434--14665
89
2.6
89
94
0
394
31
24
20
23
1.98
20391--20445
11
5.1
11
82
4
76
45
1
1
50
1.22
20391--20445
21
2.5
22
76
5
76
45
1
1
50
1.22
20386--20449
32
2.0
32
100
0
128
43
3
3
50
1.33
23257--23674
207
2.0
207
99
0
818
29
26
11
32
1.91
28144--28237
31
2.9
33
72
12
97
46
5
17
30
1.70
29680--29720
21
1.9
22
90
5
66
12
34
14
39
1.84
35490--35528
19
2.1
19
100
0
78
23
20
15
41
1.90

Tables:   1

The End!