Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012006.1 Corchorus olitorius cultivar O-4 contig12039, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23867

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4--47
2
22.0
2
100
0
88
50
0
0
50
1.00
3925--3949
13
1.9
13
100
0
50
40
12
0
48
1.40
5179--5222
19
2.4
18
85
11
54
43
2
2
52
1.26
6969--7045
26
3.0
26
94
0
127
40
3
5
50
1.43
8008--8047
18
2.2
19
86
13
57
60
5
12
22
1.52
21577--21612
6
5.8
6
90
3
54
33
13
2
50
1.57
21823--21903
39
2.0
40
90
2
128
51
7
3
37
1.48
21894--21940
25
1.9
24
91
4
76
31
6
8
53
1.57
22015--22411
205
2.0
193
91
5
632
35
11
8
45
1.70

Tables:   1

The End!