Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012008.1 Corchorus olitorius cultivar O-4 contig12041, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37999

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1788--1835
22
2.2
22
85
7
62
47
10
22
18
1.79
2734--2777
21
2.1
21
87
8
63
25
2
9
63
1.35
12305--13143
433
1.9
430
81
4
952
30
14
12
42
1.83
19670--19750
39
2.0
40
90
2
128
49
9
3
37
1.54
19741--19787
25
1.9
24
91
4
76
29
8
6
55
1.55
19859--20267
205
2.0
199
95
2
737
36
11
8
43
1.71
25735--25776
21
2.0
22
90
4
68
26
23
30
19
1.98
29035--29060
12
2.2
12
100
0
52
57
15
7
19
1.62
31331--31372
21
2.0
22
90
4
68
26
23
30
19
1.98
35048--35126
36
2.2
36
95
0
140
49
25
7
17
1.73
37907--37957
24
2.1
25
88
3
77
17
5
3
72
1.20

Tables:   1

The End!