Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012010.1 Corchorus olitorius cultivar O-4 contig12043, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23548

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8--55
2
24.0
2
100
0
96
0
50
0
50
1.00
55--81
2
13.5
2
100
0
54
48
0
0
51
1.00
3195--3331
49
2.9
47
81
7
150
27
15
6
50
1.68
12789--12818
15
2.1
14
93
6
51
33
0
0
66
0.92
20244--20387
22
6.5
22
71
10
78
40
14
11
34
1.81
20310--20403
44
2.2
43
80
5
109
37
15
11
35
1.85
20535--20582
22
2.2
22
85
10
64
33
25
2
39
1.67
20542--20609
22
3.1
22
85
4
75
35
23
5
35
1.79
20636--20823
22
8.6
21
74
9
119
32
11
11
43
1.77
20636--20805
66
2.6
66
81
7
177
34
11
11
41
1.78
20636--20825
44
4.3
44
82
1
157
32
11
12
43
1.78
21409--21449
2
20.0
2
85
5
55
48
0
4
46
1.23
22597--22622
2
13.0
2
100
0
52
50
0
0
50
1.00

Tables:   1

The End!